PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G22421
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family EIL
Protein Properties Length: 488aa    MW: 55510.4 Da    PI: 4.7042
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G22421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3196.71.9e-60912131128
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  +el++rmwkd+mllkrlk+++k     ke+ ++++++++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkek
  Ro07_G22421  91 DELERRMWKDRMLLKRLKDQNKG----KER-ADSARQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLREWWKEK 183
                  79*******************98....676.778889************************************************************* PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
         EIN3  99 vefdrngpaaiskyqaknlilsgesslqte 128
                  v+fdrngpaaiskyqa+n i++ ++++++e
  Ro07_G22421 184 VRFDRNGPAAISKYQADNSIPGVDDERNVE 213
                  *********************998888664 PP
2EIN3222.5e-07237297293353
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
         EIN3 293 khvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                   +++ +  +++ ++ +krk++++e+ +++ ++ ++tc+  q+++s+++++f d +++++++
  Ro07_G22421 237 PQIKGELIETDSDFGKKRKQQQAEEPQMMLNQKIYTCEFLQCPYSDYRIGFIDITARNNHQ 297
                  5555555667899999999999888888777788*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MPTLTIKDLD RMDAKNRGAI RGGFEELQWL LPNQYQSGFL CRCAMGIFEE MGFCGNLDFL  60
SAPAGEGEVA PEQEPEATVE EDYSDEEMDV DELERRMWKD RMLLKRLKDQ NKGKERADSA  120
RQRQSQEQAR RKKMSRAQDG ILKYMLKMME VCKAQGFVYG IIPEKGKPVS GASDNLREWW  180
KEKVRFDRNG PAAISKYQAD NSIPGVDDER NVEVEDCKPI LNHFNMGNIG QRERLIPQIK  240
GELIETDSDF GKKRKQQQAE EPQMMLNQKI YTCEFLQCPY SDYRIGFIDI TARNNHQLSC  300
PFRSNFSPVF GMPNLLNSDK PVGFSLPVAQ PKPAILQPVN QTSTYNVSGL GLTDDGQKMI  360
SELMSSYDSS TPQNKNSNTG DVNVVEDHNH QQAKFQFQMD DNFYGQEMVM GRNNMPESTP  420
MPFPQPVFQS PEVQLDQCKV FDSAFGNNPN DAIPDIRFGS GSQFSLAPSD YNVDNSLLKQ  480
DASSFWYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.12e-70EIL family protein