PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G22795

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 326aa MW: 36587.1 Da PI: 6.8677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G22795	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Edellv+++++ g+ +W++ ++ g+ R++k+c++rw +yl Ro07_G22795 14 RGPWTADEDELLVNYINKNKGHgSWRALPKLAGLLRCGKSCRLRWTNYL 62 89***************9999******99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l Ro07_G22795 68 RGPFTEEEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MGRTPCCDKS GLKRGPWTAD EDELLVNYIN KNKGHGSWRA LPKLAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FTEEEEKLII QLHGMLGNRW AAIASQLPGR TDNEIKNLWN THLRKRLIRM 120 GINPQNHEPF SSNGSTAKVS SSIATRHMAQ WESARLEAEA RLSRESSNFS TPPLEKSDSD 180 YFLRLWYSEV GESFRKLPMA GKAPSESPVS QASSSGKWGS FSAVTTDIGH HLESMAGNQN 240 EDIEYKIFKS ITGEDMVYKI YKSNAEDVIR GSDSSSCNKL DDSSESAMNL LLDYPINNDM 300 SFLEDDMNDY ATSTSAKLEN AFICPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-114	MYB family protein