PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G23595

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YC

Protein Properties

Length: 216aa MW: 24138.1 Da PI: 8.9082

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G23595	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.5	7.3e-19	21	97	22	98
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 larikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r Ro07_G23595 21 SLARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 97 69************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MARSGRLYFS TVNKNFGSER SLARIKKIMQ ADEDVGKIAL AVPVLVSKAL ELFLQDLCDR 60 TYEITLQRGA KTMNSLHLKH CVQSYNVFDF LRDIVSRVPD YGHGHSDAAA DDRAITKRRK 120 PPGDECIDSD EELKRSKMLE MSHGSSSGRG RGRGRGRGRG RGSRTTERET VHHETESEPC 180 TSIQQSSKHN INPAMAVDDV SESKELSKEN NSLIYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	158	RGRGRGRGRG
2	149	159	RGRGRGRGRGR
3	151	160	RGRGRGRGRG
4	151	161	RGRGRGRGRGR
5	153	162	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-65	NF-YC family protein