PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24017

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 551aa MW: 62162 Da PI: 9.0317

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24017	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	7e-19	51	97	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+dav+++ g++Wk+Ia+++ gRt+ qc +rwqk+l Ro07_G24017 51 KGGWTEEEDRILADAVEKFNGKNWKRIAECVA-GRTDVQCLHRWQKVL 97 688***************************.**********986 PP
2	Myb_DNA-binding	55.3	1.5e-17	103	149	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l Ro07_G24017 103 KGFWSKEEDDLIIELVAKQGSKKWSEIAKSLP-GRIGKQCRERWHNHL 149 688***************************.***********97 PP
3	Myb_DNA-binding	50.4	5e-16	155	197	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT +E+++l++ +k +G++ W+ Ia+ ++ gRt++++k++w+ Ro07_G24017 155 RTAWTNDEEQILIKSHKAYGNK-WAEIAKFLP-GRTENSIKNHWN 197 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MVQVKECDPN MEKGVFLSLS PPVSDSSGDN TSLKPTSAQG RMTGPTRRST KGGWTEEEDR 60 ILADAVEKFN GKNWKRIAEC VAGRTDVQCL HRWQKVLSPD LVKGFWSKEE DDLIIELVAK 120 QGSKKWSEIA KSLPGRIGKQ CRERWHNHLN PDIKRTAWTN DEEQILIKSH KAYGNKWAEI 180 AKFLPGRTEN SIKNHWNCSV KKRLELRSHI SDMESRKIKV GIRKKEVVRQ SLDRIDNLEK 240 NVEICSLDLD LVLGTPKGRE SRTQSSDKGN CGWLTERAVA NNIIKTTPRN VCYDRAAAAC 300 GLNVEGKQIY HNYGRLRDSH YLYATHSINA CSNPSGDLWG FPYFHGKNHI PNDHPMSWLN 360 HGLDAFDCNR RAGNFLKKPD HPVTVETSKG SQAYEKTKDA FGATENSEAS NPGSLYYRPL 420 QQEDVDYFLE NGEFPSTDSY IQTAFSSVSL CTPPSQDKGI SVDCNDPDFA LRSAARNFKS 480 SPSILRKRRH PISRLSLNSE LDHVPFEEIS SNSRNSPNIL GLSPCGETKF HCMARSNAKK 540 LFLSPQKSQK L

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MVQVKECDPN MEKGVFLSLS PPVSDSSGDN TSLKPTSAQG RMTGPTRRST KGGWTEEEDR  60
ILADAVEKFN GKNWKRIAEC VAGRTDVQCL HRWQKVLSPD LVKGFWSKEE DDLIIELVAK  120
QGSKKWSEIA KSLPGRIGKQ CRERWHNHLN PDIKRTAWTN DEEQILIKSH KAYGNKWAEI  180
AKFLPGRTEN SIKNHWNCSV KKRLELRSHI SDMESRKIKV GIRKKEVVRQ SLDRIDNLEK  240
NVEICSLDLD LVLGTPKGRE SRTQSSDKGN CGWLTERAVA NNIIKTTPRN VCYDRAAAAC  300
GLNVEGKQIY HNYGRLRDSH YLYATHSINA CSNPSGDLWG FPYFHGKNHI PNDHPMSWLN  360
HGLDAFDCNR RAGNFLKKPD HPVTVETSKG SQAYEKTKDA FGATENSEAS NPGSLYYRPL  420
QQEDVDYFLE NGEFPSTDSY IQTAFSSVSL CTPPSQDKGI SVDCNDPDFA LRSAARNFKS  480
SPSILRKRRH PISRLSLNSE LDHVPFEEIS SNSRNSPNIL GLSPCGETKF HCMARSNAKK  540
LFLSPQKSQK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-82	MYB family protein