PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G24113
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 266aa    MW: 29974.3 Da    PI: 10.009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G24113genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1384132555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h e+Er+RR+++ + ++ Lr+llP  +   ++K s ++   +Av+YIk+Lq
  Ro07_G24113  84 HRENERQRRQEMATLYSSLRSLLPLEF--IKGKRSTSDHMNEAVNYIKHLQ 132
                  99***********************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MFPLHQGNKL VFQISSSNSH HLNSSEDRIL GYASPDGGSS TVLSNNNNNN KMGKSRRRKL  60
VVAALDQIII ENSKDNQKKK MMIHRENERQ RRQEMATLYS SLRSLLPLEF IKGKRSTSDH  120
MNEAVNYIKH LQNRIKTLDA RRDELKKFPK ISTVTDRRCT TGISLNSDKA NLPSCFRVHP  180
CFGGVEIVVS CGFREDGLPF ISISKVLETL LEQGLTVVSC VSTNVNERLL HTIQSEVNDV  240
ESLELSGLEQ KLAEVLLPTS RKVNKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-48bHLH family protein