PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G24114
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 207aa    MW: 22779.2 Da    PI: 9.9615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G24114genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-131769155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 ++++h  +Er+RR+++ + ++ Lr+ lP+ +    ++K s a+   +Av++Ik+Lq
  Ro07_G24114 17 KKMMHRDIERKRRQEMATLYASLRSALPPqS---IKGKRSLADHMNEAVNHIKHLQ 69
                 6899*************************55...*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MDNNQRYANS TIDDNQKKMM HRDIERKRRQ EMATLYASLR SALPPQSIKG KRSLADHMNE  60
AVNHIKHLQT RIKELGSQRD DLKIQTSSSP DLSGTTALGL AGNLIMSGSS GSSSSLLSVG  120
NCSTSRVAVN PCLGGVEIVI SYGAGDCLEQ QGVVLSRLMQ ILLQQGLTVI SCATTQVNKR  180
LVYTIQSEIW YAKYPRLPTK KILCNKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-39bHLH family protein