PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24889

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 224aa MW: 25140 Da PI: 6.3666

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24889	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	20	66	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT Ed+l+ +a + + +W++Ia++++ gR++k++ +++ ++ Ro07_G24889 20 RWTRSEDKLFEQALVSFSEDlpdRWERIAEMVP-GRSPKEVLEHYETL 66 9***************99*********.*********875 PP
2	Myb_DNA-binding	42.1	2.1e-13	120	165	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++ E++l++ + kq+G+g+W++I+r + +Rt+ q+ s+ qky Ro07_G24889 120 KPWSEIEHKLFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 165 58*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MFQETTPCWA SVTQSATSTR WTRSEDKLFE QALVSFSEDL PDRWERIAEM VPGRSPKEVL 60 EHYETLVHDV LEIDSGRVEL PSYVDDSGVG WDSASQISFD GCKANNANNS AEAAERKKGK 120 PWSEIEHKLF LVGLKQFGKG DWRSISRNVV VTRTPTQVAS HAQKYFLRQS SVKKERKRSS 180 IHDITTVESN SVSVPADRNW IPPPPPPPGD QGGSFGFQDF GFPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-72	MYB family protein