PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24890

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 875aa MW: 99003.4 Da PI: 6.3273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24890	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.4	2.7e-14	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+eYA+++GF+ ++ +s++ + +g++t r+fvC +eg +++++++ C+a+l+++ + +kw+ tk+++eH+H+l+ Ro07_G24890 63 LYDEYARRLGFNSKVGQSSRANPDGTTTAREFVCGREGLKRRHTDS--------------CDAMLRIESKGPDKWVSTKFVKEHSHALV 137 6************************************9998777..............*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MDVQVIDVQA VGHRGMAEDG DGERSEGGEV NNAEIPQSHD EEGEIPEPYV GMEFHSEDAA 60 KTLYDEYARR LGFNSKVGQS SRANPDGTTT AREFVCGREG LKRRHTDSCD AMLRIESKGP 120 DKWVSTKFVK EHSHALVSPS PVHYLRPRRH FAGAAKNVAE AYQGVGIVPS GVMYVSVDGN 180 RASVEKNRLV RNTSSAESNR PVKNAAPINC SRPCSRRRTL GKDAQNLLEY FKKMQAENPG 240 FFYAIQLDED NHMGNVFWSD ARSRTAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ 300 TVLFGCALLL DESEASFNWL FKTFLTAMND CPPVSIMTDQ DRAIQTAVSQ VFPEVRHCIS 360 KWHVLREGQE RLAHVCLAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRSNDWLQS 420 LYSARAQWVP VYFRDSFFAA ISPNQGYDGS FFDGYVNQQT TLPMFFRQYE RALENWFERE 480 VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKNVTG LEERSGDLHD QESLTLRYNS LCREAIRYAE DGATSTETYN AAMTALRDGG 660 KKVSIVKRNV AKVTPPRSQV TGTGYEEKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP 720 AQAISDLNLP RMAPVSLLRD DGTPENMVVL PHLKSMTWVM ENKNSAPGNR VAVINLKLQD 780 YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD TETTTGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSNVVSIL YQFSL

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MDVQVIDVQA VGHRGMAEDG DGERSEGGEV NNAEIPQSHD EEGEIPEPYV GMEFHSEDAA  60
KTLYDEYARR LGFNSKVGQS SRANPDGTTT AREFVCGREG LKRRHTDSCD AMLRIESKGP  120
DKWVSTKFVK EHSHALVSPS PVHYLRPRRH FAGAAKNVAE AYQGVGIVPS GVMYVSVDGN  180
RASVEKNRLV RNTSSAESNR PVKNAAPINC SRPCSRRRTL GKDAQNLLEY FKKMQAENPG  240
FFYAIQLDED NHMGNVFWSD ARSRTAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ  300
TVLFGCALLL DESEASFNWL FKTFLTAMND CPPVSIMTDQ DRAIQTAVSQ VFPEVRHCIS  360
KWHVLREGQE RLAHVCLAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRSNDWLQS  420
LYSARAQWVP VYFRDSFFAA ISPNQGYDGS FFDGYVNQQT TLPMFFRQYE RALENWFERE  480
VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKNVTG LEERSGDLHD QESLTLRYNS LCREAIRYAE DGATSTETYN AAMTALRDGG  660
KKVSIVKRNV AKVTPPRSQV TGTGYEEKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP  720
AQAISDLNLP RMAPVSLLRD DGTPENMVVL PHLKSMTWVM ENKNSAPGNR VAVINLKLQD  780
YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD TETTTGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSNVVSIL YQFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein