PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G25184

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 463aa MW: 51776.8 Da PI: 6.5706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G25184	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	259	305	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++f+ Lrel+P++ +K++ a+++ A+ YI +L Ro07_G25184 259 TKHFATERYRRIQLNDKFSALRELVPNP-----TKPDRASVVGDAIGYIEEL 305 78************************.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MQKTSKSTRP SKSKKPKMYV DSAAGACNFD PNNNPMSESA PEVVLNNTNN NSFAHEENLR 60 RLSMEEELSN YHHNTAMEIE QLQNEMGFGT MDQNTSNNPH LVNPFENHQA TNWDNNNEMQ 120 QQLPQVPTPD LLSLFHLPSS SVLPHSSITF TNPKSPGCFP GSFGFEALPE TPSGTAASSV 180 MYDPLFHLPP QPQPPLFREL LQSLPHGYNL GGLRNGSSLF NNGGDEGEDG SRQLFENGVL 240 EFSKEIKPIG RGRGGNKGTK HFATERYRRI QLNDKFSALR ELVPNPTKPD RASVVGDAIG 300 YIEELKRTVD ELKLLVEKKR CQRERSKRHK TEQDVGAGDD ESCNTKPLID PHEQSYNNGS 360 LRSSWLQRKS KDTEVDVRII DDEVTIKLVQ RKKINLLLSV SKLLDELQLE LHHAAGGHIG 420 NSYSFLFNTK MYEGSSLYAS AIANKLIEAL DRQYAAIPPT SSY

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MQKTSKSTRP SKSKKPKMYV DSAAGACNFD PNNNPMSESA PEVVLNNTNN NSFAHEENLR  60
RLSMEEELSN YHHNTAMEIE QLQNEMGFGT MDQNTSNNPH LVNPFENHQA TNWDNNNEMQ  120
QQLPQVPTPD LLSLFHLPSS SVLPHSSITF TNPKSPGCFP GSFGFEALPE TPSGTAASSV  180
MYDPLFHLPP QPQPPLFREL LQSLPHGYNL GGLRNGSSLF NNGGDEGEDG SRQLFENGVL  240
EFSKEIKPIG RGRGGNKGTK HFATERYRRI QLNDKFSALR ELVPNPTKPD RASVVGDAIG  300
YIEELKRTVD ELKLLVEKKR CQRERSKRHK TEQDVGAGDD ESCNTKPLID PHEQSYNNGS  360
LRSSWLQRKS KDTEVDVRII DDEVTIKLVQ RKKINLLLSV SKLLDELQLE LHHAAGGHIG  420
NSYSFLFNTK MYEGSSLYAS AIANKLIEAL DRQYAAIPPT SSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	8e-72	bHLH family protein