PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G25400
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 222aa    MW: 24993.6 Da    PI: 4.7571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G25400genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-17115165255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k  r++lg+f t  +Aaka++ a+ +l+g
  Ro07_G25400 115 HYRGVRRRP-WGKFAAEIRDP---ArKGSRVWLGTFETDVDAAKAYDCAAFRLRG 165
                  7********.**********8...4445**********99*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MAATQEQDES TLELIRQHLL GDFSFTDTFI TNLSFQLSPE ISYFQPLKSE YSLSESESTS  60
PISNPESYLN PKPEPVTMES AEEPMNSNSN SSSKSEPKRK SSSPNSSSSS GEVRHYRGVR  120
RRPWGKFAAE IRDPARKGSR VWLGTFETDV DAAKAYDCAA FRLRGRKAIL NFPLEAGESI  180
PPTNTVRKRR KSVKQEEEVV EVPEPEELDI QSWVVWEGVE DA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-43ERF family protein