PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G25647

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 560aa MW: 64098 Da PI: 7.4008

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G25647	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.9e-17	85	227	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................................... 47 kfY+ Y+ GF++rk+k k++ + +++r++vCskegkr+ + + Ro07_G25647 85 KFYSYYSLAKGFNMRKNKLDKNRAGTVVIRRQLVCSKEGKRRVSAPNdnisqlqgskgthfghlagvdampanyqhssigknaqqksmgeknisgqnp 182 6***************************************9988899******************************************999 PP FAR1 48 .tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ ++r tr +C a+++vk+ + +g+++ +++ +eHnH+l+ Ro07_G25647 183 hKKQCTKNRRITRGNCPASFTVKLCTkRGVYYASEFITEHNHPLS 227 8888899*************999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MVFSPSFEMD GRGFRYTECQ YNESGMDLNT EEASSTEEWD EEMEDTNLTE EEMQDCTQYR 60 GKPYKDLTLD DLKGVEFKSI EEVDKFYSYY SLAKGFNMRK NKLDKNRAGT VVIRRQLVCS 120 KEGKRRVSAP NDNISQLQGS KGTHFGHLAG VDAMPANYQH SSIGKNAQQK SMGEKNISGQ 180 NPHKKQCTKN RRITRGNCPA SFTVKLCTKR GVYYASEFIT EHNHPLSKPE HRQFLSSHWT 240 VRDPDFAQGN SLRKLSMPTC HAYEFLVHQA AGYKYVGFTS RNLYNKVQGE RRERIRNRVL 300 VDDYRSDNSE PVYGSHMSCL QEEIGKKFTH DIFLLIKDQI NFESKFVISG RDVVPHTCAS 360 LISLTQYGKP ERRWTVLYQP AESNPTFVCS CKLFQSDGIP CCHIFAVIKC EQLTTFPESL 420 VNKRWTKEGT IKRTLSSSSL VNDKYVQIAR YGELMSQCSK ICHLVSYSDE GYDQIREALG 480 QLTIVSQKHR GTHPDHCIPE GEFEDGVLTQ SQPMNLIHHL EEVRPFEFVA GYEKSKNGAS 540 NSNSSDIPDF FQHFSPFPDV

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MVFSPSFEMD GRGFRYTECQ YNESGMDLNT EEASSTEEWD EEMEDTNLTE EEMQDCTQYR  60
GKPYKDLTLD DLKGVEFKSI EEVDKFYSYY SLAKGFNMRK NKLDKNRAGT VVIRRQLVCS  120
KEGKRRVSAP NDNISQLQGS KGTHFGHLAG VDAMPANYQH SSIGKNAQQK SMGEKNISGQ  180
NPHKKQCTKN RRITRGNCPA SFTVKLCTKR GVYYASEFIT EHNHPLSKPE HRQFLSSHWT  240
VRDPDFAQGN SLRKLSMPTC HAYEFLVHQA AGYKYVGFTS RNLYNKVQGE RRERIRNRVL  300
VDDYRSDNSE PVYGSHMSCL QEEIGKKFTH DIFLLIKDQI NFESKFVISG RDVVPHTCAS  360
LISLTQYGKP ERRWTVLYQP AESNPTFVCS CKLFQSDGIP CCHIFAVIKC EQLTTFPESL  420
VNKRWTKEGT IKRTLSSSSL VNDKYVQIAR YGELMSQCSK ICHLVSYSDE GYDQIREALG  480
QLTIVSQKHR GTHPDHCIPE GEFEDGVLTQ SQPMNLIHHL EEVRPFEFVA GYEKSKNGAS  540
NSNSSDIPDF FQHFSPFPDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-12	FAR1 family protein