PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G27173
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 218aa    MW: 23631.1 Da    PI: 6.3487
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G27173genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.5e-41481471100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+C+++Cv+apyfp ++p kf +++++FGasn++kll++lp++++ da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+++la+++
  Ro07_G27173  48 PCAACKTLRRRCVEKCVFAPYFPPTDPIKFTIAQRVFGASNIIKLLQDLPKSQKADAVSSMVYEASARLRDPVYGCAGAICSLQKQISELQSQLAKAQ 145
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  Ro07_G27173 146 AE 147
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MEFNGSTATT TTTPPSSLSY SPLISSSPAT SPTTSAPPPL PPAVVVSPCA ACKTLRRRCV  60
EKCVFAPYFP PTDPIKFTIA QRVFGASNII KLLQDLPKSQ KADAVSSMVY EASARLRDPV  120
YGCAGAICSL QKQISELQSQ LAKAQAELLN MQCQQGNLIA LNCMEIMRSA APNTTQQFKE  180
AVAPILQQQQ YLNYNIDTSC FLDENCLGTA SDWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-65LBD family protein