PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33235

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 751aa MW: 84177.5 Da PI: 10.5218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33235	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.3e-12	49	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 ++W t+E++ll++avk++G ++W+++a +++ + t+++ck++++++ Ro07_G33235 49 MSWGTWEELLLACAVKRHGLKDWESVAMEVQaktslpqLLTTAYNCKLKYHDL 101 58**********************************889*******986 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MEEYEDEHMI ISMKGDGSSS GRSNSKQEAQ AQPRGGGGGG EQQTTTSMMS WGTWEELLLA 60 CAVKRHGLKD WESVAMEVQA KTSLPQLLTT AYNCKLKYHD LQRRFSNHRH HQDDDDDDPI 120 PWLDDLKKLR LAQLRHDLHR YDVSILSLQL KVKRLEEERQ DGGVKKDDEP KPDLEEEEDS 180 KGRIRSENDK TLQDQDEPGR SKPLDHENQS VNGSNSTCSK SLDKSDRVPT EPDQLPTGSA 240 EPSKGHSDSN KGSCETVPEK RRQGAAAAET RESSEAQSSA SLTRRTERKR RRTVELQDQP 300 NEQVLGKSQP LVAILQMIRA QEHSSLFERR LTSQESDKYK SLVQQHVDLE TIQTKLHKDS 360 YSCSTLTFYR DLLLLFSNAV VFFPKSSTES LTAHQLRRLV LNEMKKNNLT TRPDPSSETS 420 NWLPSPSRLA PKRTSTDHEL ERSDSLLAKH KSTAPIIVCR KRSSISSKPS SFARKATDQP 480 AEAAAFDLKP PDNNNKPSNS KHVEEEPGSV IKSASKTEEK SVTGTRSSRR MTTSHHDNNA 540 SASSTKKKNS SPAETPKAGR KRKTPEVAAA SDRKRSGAAA DFLKRIKRNS PAQKLKLKSG 600 TGTSTSSRGA EQKKRGGSKA DKVTKERMSR QSGGDNKKQV KEETSPSKRS VGRPSKKAAE 660 AAAAAIVVSP KRSRENGVKQ QQQEASRRPK KRSRRLALCR CRLPFRFSYV SLLRSSACTR 720 KLVTTYKLVF LLIMFVIHRS ILSTKNKKLR W

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MEEYEDEHMI ISMKGDGSSS GRSNSKQEAQ AQPRGGGGGG EQQTTTSMMS WGTWEELLLA  60
CAVKRHGLKD WESVAMEVQA KTSLPQLLTT AYNCKLKYHD LQRRFSNHRH HQDDDDDDPI  120
PWLDDLKKLR LAQLRHDLHR YDVSILSLQL KVKRLEEERQ DGGVKKDDEP KPDLEEEEDS  180
KGRIRSENDK TLQDQDEPGR SKPLDHENQS VNGSNSTCSK SLDKSDRVPT EPDQLPTGSA  240
EPSKGHSDSN KGSCETVPEK RRQGAAAAET RESSEAQSSA SLTRRTERKR RRTVELQDQP  300
NEQVLGKSQP LVAILQMIRA QEHSSLFERR LTSQESDKYK SLVQQHVDLE TIQTKLHKDS  360
YSCSTLTFYR DLLLLFSNAV VFFPKSSTES LTAHQLRRLV LNEMKKNNLT TRPDPSSETS  420
NWLPSPSRLA PKRTSTDHEL ERSDSLLAKH KSTAPIIVCR KRSSISSKPS SFARKATDQP  480
AEAAAFDLKP PDNNNKPSNS KHVEEEPGSV IKSASKTEEK SVTGTRSSRR MTTSHHDNNA  540
SASSTKKKNS SPAETPKAGR KRKTPEVAAA SDRKRSGAAA DFLKRIKRNS PAQKLKLKSG  600
TGTSTSSRGA EQKKRGGSKA DKVTKERMSR QSGGDNKKQV KEETSPSKRS VGRPSKKAAE  660
AAAAAIVVSP KRSRENGVKQ QQQEASRRPK KRSRRLALCR CRLPFRFSYV SLLRSSACTR  720
KLVTTYKLVF LLIMFVIHRS ILSTKNKKLR W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	292	RKRRR
2	288	293	RKRRRT
3	546	563	KKKNSSPAETPKAGRKRK
4	687	693	RRPKKRS
5	687	695	RRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-40	MYB_related family protein