PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33459

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 480aa MW: 54137.2 Da PI: 8.39

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33459	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46	1.7e-14	123	199	2	81
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 Y +Y+ + GF+vrk+k ++ +ng ++k ++Csk+gkr+ +++ + + + + tr+gCka+++ +++++gk+++++ Ro07_G33459 123 AYANYGGKKGFNVRKQKRDRN-KNGLVVKLFYCCSKQGKRKIDRNY--EPSYSLPITRVGCKAHMNCRLQNNGKFKIQQY 199 599***********99998.8888************9988..89999**********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
VSKNTNCTML RSESFINYGI VSQKEDEASL QGEDEVISLQ GEDEVISLQG EDEVISLQGE 60 DEVDLSSEDG VYLPGQDEGY MQGKEDFLSE SNDCSLKSNE KKDKTEELCI GMEFSSDESA 120 YKAYANYGGK KGFNVRKQKR DRNKNGLVVK LFYCCSKQGK RKIDRNYEPS YSLPITRVGC 180 KAHMNCRLQN NGKFKIQQYT SIGDYVANKV SKSDMKYEYK VSYRDIAREH LVKFDALVQT 240 ITCSCMKFSF VGILCRHALK VLDKKNVRRI PSSYILNRWS KEAKARSIIN YQATKTSANP 300 KESIGKRYSH LCRNYREIAS VVAEHKELTK YAHEHSIELL KNLEEKKKKL LKDNTCGKEN 360 TSEGHDDVLG EMPKACGVKR KATVGRPRGS GGYGRFKGVL EGKKNIARAE SYASTSPVRK 420 AQAKRQISFQ EIEDEVPTLP PSAQVDSSTQ LSACDPDMPF QDKLSFTQLL DAVITPDDFL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

VSKNTNCTML RSESFINYGI VSQKEDEASL QGEDEVISLQ GEDEVISLQG EDEVISLQGE  60
DEVDLSSEDG VYLPGQDEGY MQGKEDFLSE SNDCSLKSNE KKDKTEELCI GMEFSSDESA  120
YKAYANYGGK KGFNVRKQKR DRNKNGLVVK LFYCCSKQGK RKIDRNYEPS YSLPITRVGC  180
KAHMNCRLQN NGKFKIQQYT SIGDYVANKV SKSDMKYEYK VSYRDIAREH LVKFDALVQT  240
ITCSCMKFSF VGILCRHALK VLDKKNVRRI PSSYILNRWS KEAKARSIIN YQATKTSANP  300
KESIGKRYSH LCRNYREIAS VVAEHKELTK YAHEHSIELL KNLEEKKKKL LKDNTCGKEN  360
TSEGHDDVLG EMPKACGVKR KATVGRPRGS GGYGRFKGVL EGKKNIARAE SYASTSPVRK  420
AQAKRQISFQ EIEDEVPTLP PSAQVDSSTQ LSACDPDMPF QDKLSFTQLL DAVITPDDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1 family protein