PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G33896
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 102aa    MW: 10811.2 Da    PI: 9.2925
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G33896genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC23.99e-086341846
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvl 46
                 ++++P arikki+++dedv +i+  +P l
  Ro07_G33896  6 DTRFPAARIKKIMQTDEDVGKIALAVPLL 34
                 5789**********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLDIVSKV PDLGGSDAAG EDCPVAKRRK  60
VAADDEDTES DDEAKRSKMM NDPGNTISSG RGRGRAGAGG GR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-17NF-YC family protein