PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G34179
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 174aa    MW: 20290.4 Da    PI: 10.226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G34179genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.79.4e-191398290
         FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                  Y++Y+ + GF+ rk+k +++ +ng ++k  ++Csk+g+r+ +kk   + + + + tr+gCka++  +++++gk+++ +le   nHel 
  Ro07_G34179 13 AYDKYGGKKGFNARKQKRNRN-KNGLVVKLSYCCSKQGQRKINKKC--EPSYSVPITRVGCKAHMSCRLQNNGKYKIVSLERTYNHELK 98
                 59**************99998.8888****************9998..89999**********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MEFSSDHESA YKAYDKYGGK KGFNARKQKR NRNKNGLVVK LSYCCSKQGQ RKINKKCEPS  60
YSVPITRVGC KAHMSCRLQN NGKYKIVSLE RTYNHELKEV YTSEIFKLFK QQYKRIGDYV  120
ANKVSKFDMK YEYKVSYRGI AREHLVKFDV LLQTITYLSI TLDSLFSALS VLNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-10FAR1 family protein