PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY11872.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 421aa MW: 45802.2 Da PI: 7.9357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY11872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.5e-12	46	71	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG+ C+F+H+ TEY11872.1 46 PGEPDCIYYLRTGSCGYGSDCRFNHP 71 5789*********************8 PP
2	zf-CCCH	34.8	2.8e-11	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++C+++H++ TEY11872.1 92 QPDCGHYLKTGTCKYGSTCRYHHPK 116 789********************96 PP
3	zf-CCCH	34.5	3.4e-11	136	159	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++rtG CkyG CkF+H++ TEY11872.1 136 KPCPFYMRTGLCKYGYACKFHHPQ 159 69********************97 PP
4	zf-CCCH	36.4	8.9e-12	260	285	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f++ G CkyG+ Ck++H++ TEY11872.1 260 DQPECRYFMEHGNCKYGSECKYHHPR 285 689*********************96 PP
5	zf-CCCH	35.1	2.3e-11	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++ +G CkyG++C+F H++ TEY11872.1 305 PGQPVCSYYSMYGLCKYGPTCRFDHPM 331 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MPGNRKFSRN GSASDRVEEA MRRLKVEESG ENGGAGDELG SYPDRPGEPD CIYYLRTGSC 60 GYGSDCRFNH PSSAGQVYGV KTSNELPERA GQPDCGHYLK TGTCKYGSTC RYHHPKDRQA 120 DFVLNMLGLP MRQDAKPCPF YMRTGLCKYG YACKFHHPQP TLAAANVLPV VGPVYGSGGS 180 AGVSSPVVSS ESVSAASLSK ATYFASTLQV PHSYMPLFIP QSQGWNTYMG NASPLSVTSV 240 LTGPVPSGHL SVSYLPERPD QPECRYFMEH GNCKYGSECK YHHPREKLTQ LVSTSLGPLG 300 LPLRPGQPVC SYYSMYGLCK YGPTCRFDHP MDGHNYAYSL SVPPPAFTYL SPTPYQSTSL 360 PIADISPTKS SKLSDWIKKE ATANKHNQNS NTKSTGESLD QSDSLPHSSK ASSEVHHGES 420 D

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MPGNRKFSRN GSASDRVEEA MRRLKVEESG ENGGAGDELG SYPDRPGEPD CIYYLRTGSC  60
GYGSDCRFNH PSSAGQVYGV KTSNELPERA GQPDCGHYLK TGTCKYGSTC RYHHPKDRQA  120
DFVLNMLGLP MRQDAKPCPF YMRTGLCKYG YACKFHHPQP TLAAANVLPV VGPVYGSGGS  180
AGVSSPVVSS ESVSAASLSK ATYFASTLQV PHSYMPLFIP QSQGWNTYMG NASPLSVTSV  240
LTGPVPSGHL SVSYLPERPD QPECRYFMEH GNCKYGSECK YHHPREKLTQ LVSTSLGPLG  300
LPLRPGQPVC SYYSMYGLCK YGPTCRFDHP MDGHNYAYSL SVPPPAFTYL SPTPYQSTSL  360
PIADISPTKS SKLSDWIKKE ATANKHNQNS NTKSTGESLD QSDSLPHSSK ASSEVHHGES  420
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-85	C3H family protein