PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY11976.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 226aa MW: 23836.8 Da PI: 8.1771

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY11976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.2	1.1e-12	29	53	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V TEY11976.1 29 CSGCRTVLLYPSGATNVCCAICNMV 53 ***********************88 PP
2	zf-LSD1	40.4	4.8e-13	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV TEY11976.1 68 CGGCRTLLMHARGATSVRCSCCHTV 92 ************************9 PP
3	zf-LSD1	48.5	1.5e-15	109	133	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ TEY11976.1 109 CGNCHTMLMYPAGAPSVKCAICHFI 133 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MYGIYVFGRA AFNLILDFGL ADMQSQVVCS GCRTVLLYPS GATNVCCAIC NMVTSVPPPG 60 MEMAQLICGG CRTLLMHARG ATSVRCSCCH TVNLVPAAVP PNNVAHVNCG NCHTMLMYPA 120 GAPSVKCAIC HFITNVNMGD TRVPIPVNRP AGNSNSAPTQ STSTVTTAHS HNQTVVVQNP 180 MTVDESGKLV SPSTLGFAFN CMVQFHVKMI KSVLQQVSNV VVGVTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-62	LSD family protein