PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY12078.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 476aa MW: 51760.4 Da PI: 4.1485

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY12078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.9	2.8e-12	301	325	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C +V TEY12078.1 301 CGGCAVLLMYPHGAPAVQCSSCRFV 325 **********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVEEEEIAAA AVNAAEEVVV EEEDDDDDDD GPPPGFQCIL TLQPPDYDDE EEEDGPPPGF 60 DFVAPKPPQL LPSSVLLGKA DCGVTLSLCK DCYILYINVM GAALDWHVAF VNNVVKLAKS 120 SVRRFVTLDI SDVKEESNED LDEGPPPGWE SVLLCQMPQP QTPPLHPPST VSSNCEMGSK 180 PKITEMDDEI HQSELEKMPT PGKSSPATPP TQQLLLSEQP SDAVKKEENK NDEKRPTPMP 240 QPASPLQQLQ SKPHSLTPVP KSSSSVLTFI ELKFDQIYVS LNCMTDVTQP SAAHEVGQVN 300 CGGCAVLLMY PHGAPAVQCS SCRFVTEIGA FQYSCGSSLI VVLGSIICDD TGSVCEILLV 360 SGRVFCKKGC DADGETWDEC LGECDEICYK DPVLKDKQWS AYIDRSPGSV RYSEECFRAC 420 IAGCSYKFDI PAEKLKQVHS RPPKPAPEEK PRPPAAESRP PLVYVPCGDE VLNTSA

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVEEEEIAAA AVNAAEEVVV EEEDDDDDDD GPPPGFQCIL TLQPPDYDDE EEEDGPPPGF  60
DFVAPKPPQL LPSSVLLGKA DCGVTLSLCK DCYILYINVM GAALDWHVAF VNNVVKLAKS  120
SVRRFVTLDI SDVKEESNED LDEGPPPGWE SVLLCQMPQP QTPPLHPPST VSSNCEMGSK  180
PKITEMDDEI HQSELEKMPT PGKSSPATPP TQQLLLSEQP SDAVKKEENK NDEKRPTPMP  240
QPASPLQQLQ SKPHSLTPVP KSSSSVLTFI ELKFDQIYVS LNCMTDVTQP SAAHEVGQVN  300
CGGCAVLLMY PHGAPAVQCS SCRFVTEIGA FQYSCGSSLI VVLGSIICDD TGSVCEILLV  360
SGRVFCKKGC DADGETWDEC LGECDEICYK DPVLKDKQWS AYIDRSPGSV RYSEECFRAC  420
IAGCSYKFDI PAEKLKQVHS RPPKPAPEEK PRPPAAESRP PLVYVPCGDE VLNTSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-11	LSD family protein