PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY12728.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 410aa MW: 46913.2 Da PI: 4.7111

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY12728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.7	8.6e-20	15	53	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rqvt+ kRr+gilKKA+E+SvLCd+ + +i+fs++gk TEY12728.1 15 NSRQVTYGKRRAGILKKAQEISVLCDIPIVLIMFSPSGK 53 579**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIMFSP SGKPSIFCGQ 60 RRLMLKNKNG YVVIRLLFGF SNIDEMIAKY AQLTPKERAK RRLESLETLK RNFKKLDQDV 120 DIEEFLDTST PSIEEMQNRV MSLQLQLDEA RERVRWWSNP DTIEDVEHLN QMEDSLRESL 180 NRTQVTKEKF FKEPLIQFDC TSQVCGDFGR VYEQDLPKPQ FPNAMLFPLA TTSDQDCTNQ 240 SWLPGGEAQH MMLPGEPQFL GSRDMECSRD ASFPTCSGYF ADVKEQELEN SRQMKTERLE 300 EGLTVDDYTY SAQLRLPLGD QYPYSSFGNL SFPDMMETGK DANFQLSSLD YQINGNFDLP 360 RSVCNNFPPS LVPAAGSCAI SMLNDHSYPQ VQQQVVEGRF SGDVVLDDEC

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIMFSP SGKPSIFCGQ  60
RRLMLKNKNG YVVIRLLFGF SNIDEMIAKY AQLTPKERAK RRLESLETLK RNFKKLDQDV  120
DIEEFLDTST PSIEEMQNRV MSLQLQLDEA RERVRWWSNP DTIEDVEHLN QMEDSLRESL  180
NRTQVTKEKF FKEPLIQFDC TSQVCGDFGR VYEQDLPKPQ FPNAMLFPLA TTSDQDCTNQ  240
SWLPGGEAQH MMLPGEPQFL GSRDMECSRD ASFPTCSGYF ADVKEQELEN SRQMKTERLE  300
EGLTVDDYTY SAQLRLPLGD QYPYSSFGNL SFPDMMETGK DANFQLSSLD YQINGNFDLP  360
RSVCNNFPPS LVPAAGSCAI SMLNDHSYPQ VQQQVVEGRF SGDVVLDDEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-70	M-type_MADS family protein