PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY15341.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 543aa MW: 57701.1 Da PI: 7.8577

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY15341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.4e-11	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt +C yGdrC+F+H++ TEY15341.1 51 DEPNCIYYLRTAFCGYGDRCRFNHPR 76 689*********************96 PP
2	zf-CCCH	26.5	1.1e-08	156	176	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++r G CkyG++Ck++H++ TEY15341.1 156 QYYMRAGMCKYGGSCKYHHPK 176 59*****************96 PP
3	zf-CCCH	35.1	2.3e-11	197	222	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY15341.1 197 GEKECSYYVKTGQCKFGVTCKFHHPQ 222 7899********************97 PP
4	zf-CCCH	35.4	1.8e-11	365	391	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++Ck++H+p TEY15341.1 365 PGQPECQYYLRNGDCKFGATCKYHHPP 391 5789*********************97 PP
5	zf-CCCH	36.5	8.1e-12	413	437	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY15341.1 413 APLCSHYAQNGVCKFGPSCKFDHPM 437 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MQRFSVIQAM EVAPADPVAE WAAPGGETGL EEPMWQLGLG GGPEAYPERP DEPNCIYYLR 60 TAFCGYGDRC RFNHPRDRGK AMGALRASGG EYPERVGQPI CQFESLTLAK VIYKYTPDAV 120 RLFPECFGRL DISATALYLL CENYVLFNSP FAMDLQYYMR AGMCKYGGSC KYHHPKQGVG 180 SSAPVALNFY GYPLRPGEKE CSYYVKTGQC KFGVTCKFHH PQLAGIPMPA PGPGSFTASA 240 AMPTPAMYPT GPSPSHQSSQ QYGVIQGNWQ VARPSMLHGS YVPGSYGPMI FPPGVVPVPG 300 WTPYSAPVSP AASPSTQQTI GAGPVYGITQ LSPSAAAYTG PYLSITSSAG PSSSIQKEQA 360 FPERPGQPEC QYYLRNGDCK FGATCKYHHP PEWSASRANY ILSPMGLPLR PGAPLCSHYA 420 QNGVCKFGPS CKFDHPMRSL SYSPSASSLT DMPVAPYPVG STIAILAPSS SSSDLRPELL 480 SGFSKNPLSS QMSSLSSSSA SVGSVFSNTE ALPQSSVQQS GQGSVSSSGG SSASPGGEAH 540 TSS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MQRFSVIQAM EVAPADPVAE WAAPGGETGL EEPMWQLGLG GGPEAYPERP DEPNCIYYLR  60
TAFCGYGDRC RFNHPRDRGK AMGALRASGG EYPERVGQPI CQFESLTLAK VIYKYTPDAV  120
RLFPECFGRL DISATALYLL CENYVLFNSP FAMDLQYYMR AGMCKYGGSC KYHHPKQGVG  180
SSAPVALNFY GYPLRPGEKE CSYYVKTGQC KFGVTCKFHH PQLAGIPMPA PGPGSFTASA  240
AMPTPAMYPT GPSPSHQSSQ QYGVIQGNWQ VARPSMLHGS YVPGSYGPMI FPPGVVPVPG  300
WTPYSAPVSP AASPSTQQTI GAGPVYGITQ LSPSAAAYTG PYLSITSSAG PSSSIQKEQA  360
FPERPGQPEC QYYLRNGDCK FGATCKYHHP PEWSASRANY ILSPMGLPLR PGAPLCSHYA  420
QNGVCKFGPS CKFDHPMRSL SYSPSASSLT DMPVAPYPVG STIAILAPSS SSSDLRPELL  480
SGFSKNPLSS QMSSLSSSSA SVGSVFSNTE ALPQSSVQQS GQGSVSSSGG SSASPGGEAH  540
TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-121	C3H family protein