PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY17947.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 271aa MW: 30168.8 Da PI: 9.4245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY17947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.2e-10	16	35	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+++H++ TEY17947.1 16 HYLKTGTCKYGSTCRYHHPK 35 8*****************96 PP
2	zf-CCCH	33.7	6.1e-11	55	78	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++r+G CkyG CkF+H++ TEY17947.1 55 KPCPFYMRMGLCKYGYACKFHHPQ 78 69********************97 PP
3	zf-CCCH	37.8	3.3e-12	177	202	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f++ G CkyG+ Ck++H++ TEY17947.1 177 DQPECRYFMEHGSCKYGSECKYHHPR 202 689*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MFRWLVLILI NMFFQHYLKT GTCKYGSTCR YHHPKDRQAD FLLNMLGLPM RQDAKPCPFY 60 MRMGLCKYGY ACKFHHPQPT LAASNVLPVM GPVYGSGGSA VVPSSGVSSA SISGASLSKA 120 TYFASSLPQS YLPLFLPQSQ GWNTYMGNAS PLPVTSVLTS PVPNRQQSVL YLPERPDQPE 180 CRYFMEHGSC KYGSECKYHH PREKLSQLVS TSIVPLGLPL RPGQPVCSYY RICNTALPAD 240 STTQWTGTTT HTASVSLQRP LLTRPQPHIR E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	4e-47	C3H family protein