PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY18729.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 407aa MW: 45797.9 Da PI: 7.1985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY18729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG rC++ H+ TEY18729.1 34 ICTFYQK-GACAYGTRCRYDHV 54 7****.***********7 PP
2	zf-CCCH	23.7	8.4e-08	132	154	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G+C++G +C++ Hg TEY18729.1 132 QPICS-FAAAGECPHGVSCHRVHG 154 68899.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEYSHDWKAP PNNICTFYQK GACAYGTRCR YDHVKVSQLQ 60 SPASSSSADL SSTTAATLVS GATTGVSFEH SASNLPVHPP FTPAWGENSG NSDTLQGDDD 120 LADFRDVDPA DQPICSFAAA GECPHGVSCH RVHGDVCPTC RKHCLHPFRP QEREEHMKTC 180 EKRQKHLEAL THSQEIECSV CLEKILSKPT AAERKFGILS ECDHPFCVSC IRNWRSTSRS 240 SGMDANPALR SCPICRKLSY FVIPSVIWYS SKDDKQEIVD SYKSKLRSID CRHFDYGNGT 300 CPFGTSCFYK HAYRDGRLEE VVLRHLGAED GNTVIAKDIR WRRNGMTFPT SFLISCMEEL 360 DYEELDLQKL EAKMTVAVDM RLYLVLFQRL LQVDDVVYKP VKGEHKT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEYSHDWKAP PNNICTFYQK GACAYGTRCR YDHVKVSQLQ  60
SPASSSSADL SSTTAATLVS GATTGVSFEH SASNLPVHPP FTPAWGENSG NSDTLQGDDD  120
LADFRDVDPA DQPICSFAAA GECPHGVSCH RVHGDVCPTC RKHCLHPFRP QEREEHMKTC  180
EKRQKHLEAL THSQEIECSV CLEKILSKPT AAERKFGILS ECDHPFCVSC IRNWRSTSRS  240
SGMDANPALR SCPICRKLSY FVIPSVIWYS SKDDKQEIVD SYKSKLRSID CRHFDYGNGT  300
CPFGTSCFYK HAYRDGRLEE VVLRHLGAED GNTVIAKDIR WRRNGMTFPT SFLISCMEEL  360
DYEELDLQKL EAKMTVAVDM RLYLVLFQRL LQVDDVVYKP VKGEHKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-145	C3H family protein