PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY19475.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 318aa MW: 35905.4 Da PI: 7.6866

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY19475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.6	1.2e-14	237	261	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tG C+yG++C+FaHg TEY19475.1 237 KTELCNKWEETGACPYGENCQFAHG 261 9***********************8 PP
2	zf-CCCH	20.5	8.3e-07	274	299	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ TEY19475.1 274 YKTEVCRMVLAGDACPYGHRCHFRHS 299 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MQKENTSFSA LTTTDASPVC FSRSNLFLSN SPDDYLNSDA SIYSSLFQNY TTDAASFDVG 60 DSERRCHDSS SILEYQQLYN RYTLCLSRLR DSTEEVDALR RENDSLRVSN ADLSRHVAFL 120 FSRKRLLSEF NNLSVSSPPA ASPVPLPIPV PVHVPAPQPF AECNRFERRT PEKTVLPKSI 180 SVRSKGYLKL VNRSGRETNI QKTASQPSPP SQRVYVPGAK EEEDALEFDV YNQGMLKTEL 240 CNKWEETGAC PYGENCQFAH GIKELRPVIR HPRYKTEVCR MVLAGDACPY GHRCHFRHSL 300 TEEEKLMAAG PMRTPPAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	7e-70	C3H family protein