PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY20485.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 337aa MW: 36914.3 Da PI: 7.9305

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY20485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	121	142	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+rtG C +Gd C +aHg TEY20485.1 121 ACPDFRRTGDCARGDACEYAHG 142 5********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MMTGDRPRSN PTVQIPSWDH NYMEDPTAHI QSPISAALSS QYDAALAALQ RYLPGNRDDD 60 GVPGFDDSGD AFSCDDFRMF EFKVRRCAIA RSHDWTDCPF AHPGEKARRR DPRRHHYSGG 120 ACPDFRRTGD CARGDACEYA HGVFESWLHP ARYRTQPCKD GTGCRRRVCF FAHTAEQLRI 180 LPLTTSPDAS PVGIGGGAFG NSPAMYSPPS PTAGSPPSLS LSSVTESMRC LQLSKMKMGM 240 GLSMSPPSWG IGLGLGQGSP RSPRAGFMSL PTTPIRSQTW SGLSAFDAWG GGALHEEEPV 300 MERVESGQQL RERLYAKLVR ENSLDRGRVN SARPDFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-86	C3H family protein