PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY21958.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 292aa MW: 30838 Da PI: 9.4056

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY21958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ + Ck+Gd+C+FaHg+ TEY21958.1 95 KTKICNKYKTAEGCKFGDKCNFAHGE 120 89**********************96 PP
2	zf-CCCH	31.3	3.4e-10	260	285	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ TEY21958.1 260 FKTKLCENFGK-GSCTFGDRCHFAHGE 285 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MDNRKRGRAE FANGGFKKSK PEINFGIRFG NLLDKHKCVA GCPFGENCHF LHHVPGGYNA 60 VAQMMNLAPA PTPRPVGGPP LPAHQNGYGS SAAVKTKICN KYKTAEGCKF GDKCNFAHGE 120 WELGKPIMPS HSHDNPHLAA GPMPGRFSAR PELHAPGPTA NFGLTATTKI SVDASLAGAV 180 IGKGGVNSKH ICRQTGTKLS IRDHEANPNL KNIELEGTFE QIQQASAMVR ELIVSIGCGG 240 GAGEAGRDAP AASTGRGGNF KTKLCENFGK GSCTFGDRCH FAHGEAELRK TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-61	C3H family protein