PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY22640.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 512aa MW: 55104.8 Da PI: 7.5076

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY22640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.7e-12	72	97	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ TEY22640.1 72 DEPDCIYYLRTGICGYGNRCRFNHPR 97 6899********************96 PP
2	zf-CCCH	37.7	3.4e-12	119	143	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ TEY22640.1 119 EPVCQYYMRTGMCKFGASCKYHHPK 143 789********************96 PP
3	zf-CCCH	34.8	2.8e-11	164	189	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ rtG+Ck+G +CkF+H++ TEY22640.1 164 GEKECSYYIRTGQCKFGVTCKFHHPQ 189 6789********************97 PP
4	zf-CCCH	36.7	6.8e-12	334	360	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p TEY22640.1 334 PGQPECQYYLRTGDCKFGVTCKYHHPP 360 5789*********************97 PP
5	zf-CCCH	36.6	7.5e-12	382	406	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY22640.1 382 APLCSHYAQNGVCKFGPSCKFDHPM 406 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MDRYSATQAM EPRSVDPAAE WTRPGGEIGL EGELHLRVWI MLIDLRFDFV NAEPMWRLGL 60 GDGSESYPER PDEPDCIYYL RTGICGYGNR CRFNHPRDRS AVMGDLRDTG GEYPERHGEP 120 VCQYYMRTGM CKFGASCKYH HPKHGTGSSS PLTLNFYGYP LRQGEKECSY YIRTGQCKFG 180 VTCKFHHPQP AGIQMPTPSA GPGPLAGPAI MPTPTLYSTV QSPSVQSSQQ YGVLHGNWPV 240 PRPTMLPGSY VPGSYAPMLL TPGGVPVPGW NPYSAQVSPG ALQSTQPTIG ASPVYGIPRL 300 PPSTTTYMGA HLSGTSLAGP SSSSQKEHTF PDRPGQPECQ YYLRTGDCKF GVTCKYHHPP 360 EWSTQKSFVL LSPTGLPMRP GAPLCSHYAQ NGVCKFGPSC KFDHPMRALS YSTSASSLTD 420 MPVAPYPVGS TNATLAPSSS SSLDLRPELL SGFSTDASSN LSSANSSSAS IGSTFSRSGA 480 IPEFGIHHFE QGIASSIGGS SSNQEGEAKI SS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MDRYSATQAM EPRSVDPAAE WTRPGGEIGL EGELHLRVWI MLIDLRFDFV NAEPMWRLGL  60
GDGSESYPER PDEPDCIYYL RTGICGYGNR CRFNHPRDRS AVMGDLRDTG GEYPERHGEP  120
VCQYYMRTGM CKFGASCKYH HPKHGTGSSS PLTLNFYGYP LRQGEKECSY YIRTGQCKFG  180
VTCKFHHPQP AGIQMPTPSA GPGPLAGPAI MPTPTLYSTV QSPSVQSSQQ YGVLHGNWPV  240
PRPTMLPGSY VPGSYAPMLL TPGGVPVPGW NPYSAQVSPG ALQSTQPTIG ASPVYGIPRL  300
PPSTTTYMGA HLSGTSLAGP SSSSQKEHTF PDRPGQPECQ YYLRTGDCKF GVTCKYHHPP  360
EWSTQKSFVL LSPTGLPMRP GAPLCSHYAQ NGVCKFGPSC KFDHPMRALS YSTSASSLTD  420
MPVAPYPVGS TNATLAPSSS SSLDLRPELL SGFSTDASSN LSSANSSSAS IGSTFSRSGA  480
IPEFGIHHFE QGIASSIGGS SSNQEGEAKI SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-135	C3H family protein