PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY23958.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 372aa MW: 39380.5 Da PI: 6.2712

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY23958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.4	2.1e-12	194	218	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPrGA++V+Ca+C+ + TEY23958.1 194 CTGCRTVLLYPRGATNVCCAICNVI 218 9*********************986 PP
2	zf-LSD1	37.6	3.6e-12	233	257	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA sVRC++C+tV TEY23958.1 233 CGGCRTLLMHARGAASVRCSCCHTV 257 ************************9 PP
3	zf-LSD1	24.6	4.2e-08	285	300	1	16
zf-LSD1 1 CggCrtlLsYPrGAps 16 Cg+C+t+L+YP+GAps TEY23958.1 285 CGNCHTMLMYPAGAPS 300 ***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MHEITQLKEQ TLIETVCSNT PNYDLCVATL RDFPLSATAD VAGLGLILVD AVKSKAEAAM 60 SAVEELRRRR DPEMRKALDQ CWISYKAVIA ADVPEAVAAL TKGVPKFAEF GMSDAAWEAE 120 ICEGSFGNTA AATPLSAVNK EVHDLAEVAV VRFSAIPIFV EYYQIFSFIH GFAIREISSL 180 FLKVSVEMQS QIICTGCRTV LLYPRGATNV CCAICNVITA VPPAGMEMAQ LICGGCRTLL 240 MHARGAASVR CSCCHTVNLV PGPAAVAPLP TTPPPASSNI AHVNCGNCHT MLMYPAGAPS 300 WLLDGADTAY NKNGDARVPI PVHPPGGIAT SASPPTHLAP SQSHNQTVVV HNPMTVDESG 360 KLVNNVVVGV TT

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MHEITQLKEQ TLIETVCSNT PNYDLCVATL RDFPLSATAD VAGLGLILVD AVKSKAEAAM  60
SAVEELRRRR DPEMRKALDQ CWISYKAVIA ADVPEAVAAL TKGVPKFAEF GMSDAAWEAE  120
ICEGSFGNTA AATPLSAVNK EVHDLAEVAV VRFSAIPIFV EYYQIFSFIH GFAIREISSL  180
FLKVSVEMQS QIICTGCRTV LLYPRGATNV CCAICNVITA VPPAGMEMAQ LICGGCRTLL  240
MHARGAASVR CSCCHTVNLV PGPAAVAPLP TTPPPASSNI AHVNCGNCHT MLMYPAGAPS  300
WLLDGADTAY NKNGDARVPI PVHPPGGIAT SASPPTHLAP SQSHNQTVVV HNPMTVDESG  360
KLVNNVVVGV TT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-48	LSD family protein