PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY25773.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 511aa MW: 55535.1 Da PI: 7.5848

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY25773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.6e-06	461	483	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C+F H+ TEY25773.1 461 KPCIYFNSSRGCRNGPNCTFQHD 483 69********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MGGSQKSKRV SWATEVNLCQ TLSMQLMHVC RSLKISTLIV DVKSTVRLFL SEECPSQVGM 60 GTQDHLLQAK ALSLRAGGMA YEDNLPPGFE LSQPANPWAA KLSHISLVKW KCPPRIEVDS 120 SWRVVAGEES RETETQDQRE MRVLEAIYPR PSAIPLNPSA LVGAEDSTNN DQCTPVVPIT 180 SIEDEDASVD TFYASMGPNI TPMISQQQYS PHGELLSQVN TTLTPSVGSA TGMEPDIIAA 240 AQAALSSVMP NSDQRNLIDR ELLMKILNDP KMIEQLIANH AASASGQNVA SSSMASSSTF 300 HGMPAIGTKN VASYSLPGIP STSAQYVPNL ASTPKSSYDS DIMAVHRREP LPGRFTRPEM 360 VVPSPIFAAS GPYHSPSRTG SIPHVRPSVP DVISVPSPSI AAPVAKDINY YKSLIQQHGG 420 ERRETMPPQF AHQSNQAPAM GQEPLNTAMM RPRHTKPRIM KPCIYFNSSR GCRNGPNCTF 480 QHDVSPQQKV NSIPDVQGTK RMKMDREITG A

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MGGSQKSKRV SWATEVNLCQ TLSMQLMHVC RSLKISTLIV DVKSTVRLFL SEECPSQVGM  60
GTQDHLLQAK ALSLRAGGMA YEDNLPPGFE LSQPANPWAA KLSHISLVKW KCPPRIEVDS  120
SWRVVAGEES RETETQDQRE MRVLEAIYPR PSAIPLNPSA LVGAEDSTNN DQCTPVVPIT  180
SIEDEDASVD TFYASMGPNI TPMISQQQYS PHGELLSQVN TTLTPSVGSA TGMEPDIIAA  240
AQAALSSVMP NSDQRNLIDR ELLMKILNDP KMIEQLIANH AASASGQNVA SSSMASSSTF  300
HGMPAIGTKN VASYSLPGIP STSAQYVPNL ASTPKSSYDS DIMAVHRREP LPGRFTRPEM  360
VVPSPIFAAS GPYHSPSRTG SIPHVRPSVP DVISVPSPSI AAPVAKDINY YKSLIQQHGG  420
ERRETMPPQF AHQSNQAPAM GQEPLNTAMM RPRHTKPRIM KPCIYFNSSR GCRNGPNCTF  480
QHDVSPQQKV NSIPDVQGTK RMKMDREITG A