PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY25871.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 378aa MW: 41925.2 Da PI: 8.0835

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY25871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2e-11	41	66	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p TEY25871.1 41 GEPDCSYYIRTGVCRFGPTCRFNHPP 66 6899********************97 PP
2	zf-CCCH	34.6	3.3e-11	95	117	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r+G+Ck+G++CkF+H++ TEY25871.1 95 ECGYYMRNGQCKFGSTCKFHHPQ 117 6********************97 PP
3	zf-CCCH	39.5	9.3e-13	242	265	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG Ck+G+ CkF+H++ TEY25871.1 242 PECQFYMKTGDCKFGAVCKFHHPK 265 89********************96 PP
4	zf-CCCH	38.3	2.2e-12	285	311	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ TEY25871.1 285 PGEPLCVFYSRYGICKFGPSCKFDHPM 311 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MSRASVTAAS SSMHHQDVLW QMNMRSREQH MEYGPYPVRE GEPDCSYYIR TGVCRFGPTC 60 RFNHPPNRKL AIATARMKGE YPERIGQPEC QNEMECGYYM RNGQCKFGST CKFHHPQPSN 120 MTASLHGSAV YPPIQSPTTS QLSYPLTRAS FIASPRWQSP SSYAPLVMQQ GVVSVPGWNT 180 YIGQLGSVLS SENQPPSAVN IQNDGASHQG DSGNVASEYG AVPMGYYAFQ KDNVFPERPD 240 LPECQFYMKT GDCKFGAVCK FHHPKERLVP VPDCHLSPIG LPLRPGEPLC VFYSRYGICK 300 FGPSCKFDHP MRVFAYNTPA SSSTDPTVVR RFLASSPGTV PINFSPDGLI DTSSTRNRRL 360 SLSETIQKSS GDNNTDSE

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MSRASVTAAS SSMHHQDVLW QMNMRSREQH MEYGPYPVRE GEPDCSYYIR TGVCRFGPTC  60
RFNHPPNRKL AIATARMKGE YPERIGQPEC QNEMECGYYM RNGQCKFGST CKFHHPQPSN  120
MTASLHGSAV YPPIQSPTTS QLSYPLTRAS FIASPRWQSP SSYAPLVMQQ GVVSVPGWNT  180
YIGQLGSVLS SENQPPSAVN IQNDGASHQG DSGNVASEYG AVPMGYYAFQ KDNVFPERPD  240
LPECQFYMKT GDCKFGAVCK FHHPKERLVP VPDCHLSPIG LPLRPGEPLC VFYSRYGICK  300
FGPSCKFDHP MRVFAYNTPA SSSTDPTVVR RFLASSPGTV PINFSPDGLI DTSSTRNRRL  360
SLSETIQKSS GDNNTDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-133	C3H family protein