PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY30685.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 472aa MW: 50151.3 Da PI: 8.0492

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY30685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	2.9e-12	32	57	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ TEY30685.1 32 DEPDCIYYLRTGFCGYGNRCRFNHPR 57 6899********************96 PP
2	zf-CCCH	39.3	1.1e-12	79	103	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++Ck++H++ TEY30685.1 79 EPICQYFMRTGMCKFGASCKYNHPK 103 799********************96 PP
3	zf-CCCH	34.7	2.9e-11	124	149	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY30685.1 124 GEKECSYYIKTGQCKFGVTCKFHHPQ 149 6789********************97 PP
4	zf-CCCH	37.5	3.9e-12	294	320	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G++Ck++H+p TEY30685.1 294 PGQPDCQYYLRTGDCKFGATCKYHHPP 320 5789*********************97 PP
5	zf-CCCH	36.7	6.8e-12	342	366	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY30685.1 342 APLCSHYAQNGVCKFGPSCKFDHPM 366 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MPIDSRFDFV NAEPMWGLGL GEGPESYPER PDEPDCIYYL RTGFCGYGNR CRFNHPRDRS 60 AAMGALRAIG GEYPERHGEP ICQYFMRTGM CKFGASCKYN HPKHGAGSSP PTTLNFYGYP 120 LRQGEKECSY YIKTGQCKFG VTCKFHHPQP AGIPMPAPGA GPGPLAGPAA MPTPTLYPTV 180 QSPSVQSSQQ YGVLHGNWPV SRPTMLPGSY VPGSYGPMLL APGVVPVPGW NPYSAQVSPG 240 ALQSSQPTVG AGPVYGITQL PPSSTTYTGA HLSGTSLLRP SSSSQKEYAF PDRPGQPDCQ 300 YYLRTGDCKF GATCKYHHPP EWSAQQSVVV LSPMGLPMRP GAPLCSHYAQ NGVCKFGPSC 360 KFDHPMRALS YSTSASSLTD MPVAPYPVGS TNATLAPSSS SLDLRPELLS GFSKDAFPAN 420 LSSTNSSSAS IGSTFSRSGL IPEFGIQHSG QSTASSTGGS SSHQEGEVNI SS

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MPIDSRFDFV NAEPMWGLGL GEGPESYPER PDEPDCIYYL RTGFCGYGNR CRFNHPRDRS  60
AAMGALRAIG GEYPERHGEP ICQYFMRTGM CKFGASCKYN HPKHGAGSSP PTTLNFYGYP  120
LRQGEKECSY YIKTGQCKFG VTCKFHHPQP AGIPMPAPGA GPGPLAGPAA MPTPTLYPTV  180
QSPSVQSSQQ YGVLHGNWPV SRPTMLPGSY VPGSYGPMLL APGVVPVPGW NPYSAQVSPG  240
ALQSSQPTVG AGPVYGITQL PPSSTTYTGA HLSGTSLLRP SSSSQKEYAF PDRPGQPDCQ  300
YYLRTGDCKF GATCKYHHPP EWSAQQSVVV LSPMGLPMRP GAPLCSHYAQ NGVCKFGPSC  360
KFDHPMRALS YSTSASSLTD MPVAPYPVGS TNATLAPSSS SLDLRPELLS GFSKDAFPAN  420
LSSTNSSSAS IGSTFSRSGL IPEFGIQHSG QSTASSTGGS SSHQEGEVNI SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-131	C3H family protein