PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY32178.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 797aa MW: 87746.1 Da PI: 9.1485

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY32178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	420	442	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ rtG C++G++C+F+H+p TEY32178.1 420 DCSYYIRTGVCRFGPTCRFNHPP 442 7********************96 PP
2	zf-CCCH	37	5.7e-12	525	550	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ TEY32178.1 525 GQSECQFYMKTGDCKFGAVCKFHHPK 550 7899********************96 PP
3	zf-CCCH	35.1	2.2e-11	570	596	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ TEY32178.1 570 PGEPVCVFYSRYGICKFGPSCKFDHPM 596 57899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MVGLAALSLA SLGAEAFHNL VHSRFHLDDG GNISLAGVRR LLEEAIGLDK NTLDAIKNFG 60 RAGAGSGKEV KKKVDVKQRK LRKVNNEEES DATQTESDEM NYKVKTRKVT APRNVKNSEQ 120 LKKRKITENA DIDVSPKKKP NKLAKSQKEE DNNLVEDESL SEDGQWQSSV ERSALVENLK 180 SIIKACGMSI LPVIYKKAKQ AIDDKRETIV VKELEVSNVE TSDEDQSCSR RRSTFGFVAL 240 DKPLVRGKKD KVGGNGKDLN DDNKGEEKEA EDDEDESEEF DEALFSLSVE ERERRIAPFL 300 LFALNLTVSS SATLAARDVM WMRVVNSNVA SFRHSRFLLH APPSIPGIGG GLGRISVAIL 360 SLVVIDFVIL SLARSFVKIP ATGLLLLILS TSSYVLWPIT MRSREQMESG PYPVREGELD 420 CSYYIRTGVC RFGPTCRFNH PPNRKLAIAT AMMKGEYPER IGQPECEGQP SSALSSENQP 480 PSAVNIQNDG ASHQGDSGNI ASEDGSVPMG YYAFQKDNVF PERPGQSECQ FYMKTGDCKF 540 GAVCKFHHPK ERLIPVPDCH LSPIGLPLRP GEPVCVFYSR YGICKFGPSC KFDHPMRVFA 600 YNTPASSSTD FAAIHRFLAS SPGTVPANFS SDGLMDGSYT NNRRLSLSEA RQKPSGYWLV 660 FAFWVICSMG MGAGLEPVFL IQPTLIQGLT YACLGSVVKQ PRKQSKERDA SFNSSRGANS 720 RSLKMMKAAR KKRTKRISNS ANRTKLKTEL TPRVNIDGAA AGDSIALLRR TPSKPIIPGP 780 PVLFAISYQL LISMLGT

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MVGLAALSLA SLGAEAFHNL VHSRFHLDDG GNISLAGVRR LLEEAIGLDK NTLDAIKNFG  60
RAGAGSGKEV KKKVDVKQRK LRKVNNEEES DATQTESDEM NYKVKTRKVT APRNVKNSEQ  120
LKKRKITENA DIDVSPKKKP NKLAKSQKEE DNNLVEDESL SEDGQWQSSV ERSALVENLK  180
SIIKACGMSI LPVIYKKAKQ AIDDKRETIV VKELEVSNVE TSDEDQSCSR RRSTFGFVAL  240
DKPLVRGKKD KVGGNGKDLN DDNKGEEKEA EDDEDESEEF DEALFSLSVE ERERRIAPFL  300
LFALNLTVSS SATLAARDVM WMRVVNSNVA SFRHSRFLLH APPSIPGIGG GLGRISVAIL  360
SLVVIDFVIL SLARSFVKIP ATGLLLLILS TSSYVLWPIT MRSREQMESG PYPVREGELD  420
CSYYIRTGVC RFGPTCRFNH PPNRKLAIAT AMMKGEYPER IGQPECEGQP SSALSSENQP  480
PSAVNIQNDG ASHQGDSGNI ASEDGSVPMG YYAFQKDNVF PERPGQSECQ FYMKTGDCKF  540
GAVCKFHHPK ERLIPVPDCH LSPIGLPLRP GEPVCVFYSR YGICKFGPSC KFDHPMRVFA  600
YNTPASSSTD FAAIHRFLAS SPGTVPANFS SDGLMDGSYT NNRRLSLSEA RQKPSGYWLV  660
FAFWVICSMG MGAGLEPVFL IQPTLIQGLT YACLGSVVKQ PRKQSKERDA SFNSSRGANS  720
RSLKMMKAAR KKRTKRISNS ANRTKLKTEL TPRVNIDGAA AGDSIALLRR TPSKPIIPGP  780
PVLFAISYQL LISMLGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	142	KKRKITENADIDVSPKKKPNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.1	6e-71	C3H family protein