PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY32740.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 490aa MW: 51396.6 Da PI: 7.9133

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY32740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.1	1.1e-11	54	76	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+C yG+rC+F+H++ TEY32740.1 54 DCIYYLRTGFCGYGNRCRFNHPR 76 7********************96 PP
2	zf-CCCH	19.7	1.5e-06	107	123	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tG CkyG+ Ck++H++ TEY32740.1 107 ATGMCKYGGYCKYHHPK 123 79*************96 PP
3	zf-CCCH	35.2	2.1e-11	144	169	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY32740.1 144 GEKECSYYVKTGQCKFGVTCKFHHPQ 169 7899********************97 PP
4	zf-CCCH	35.6	1.6e-11	312	338	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++Ck++H+p TEY32740.1 312 PGQPECQYYLRNGDCKFGATCKYHHPP 338 5789*********************97 PP
5	zf-CCCH	36.7	7.1e-12	360	384	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY32740.1 360 APLCSHYAQNGVCKFGPSCKFDHPM 384 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MQRFSGIQAM EVAPADPVAE WAAPGGETGL EEPMWQLGLG GGPEAYPERP DELDCIYYLR 60 TGFCGYGNRC RFNHPRDRGK AMGALRAGGG EYPERVGQPI CQLDISATGM CKYGGYCKYH 120 HPKQGVGSSA PVALNFYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPQL AGIPMPAPGP 180 GSFTASAAMP TPAMYPTGPS PGHQSSQQYG VIQGNWPVAR PSMLQGSYVP GSYSPMILPP 240 GVVPVPGWTP YSAPVSPAAS PSTQQTIGAG PVYGITQLSP SATAYTGPYL SITSSAGPSS 300 GIQKEQAFPE RPGQPECQYY LRNGDCKFGA TCKYHHPPEW SASRTNYILS PMGLPLRPGA 360 PLCSHYAQNG VCKFGPSCKF DHPMRSLSYS PSASSLTDMP VAPYPVGSTI ATLAPSSSSS 420 DLRPEPLSGF SKNPLSSQMS SLSSSSASVG SVFSNTEALP QSSVQQSGQG SVSSSGGSSA 480 SHGGEAHTSS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MQRFSGIQAM EVAPADPVAE WAAPGGETGL EEPMWQLGLG GGPEAYPERP DELDCIYYLR  60
TGFCGYGNRC RFNHPRDRGK AMGALRAGGG EYPERVGQPI CQLDISATGM CKYGGYCKYH  120
HPKQGVGSSA PVALNFYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPQL AGIPMPAPGP  180
GSFTASAAMP TPAMYPTGPS PGHQSSQQYG VIQGNWPVAR PSMLQGSYVP GSYSPMILPP  240
GVVPVPGWTP YSAPVSPAAS PSTQQTIGAG PVYGITQLSP SATAYTGPYL SITSSAGPSS  300
GIQKEQAFPE RPGQPECQYY LRNGDCKFGA TCKYHHPPEW SASRTNYILS PMGLPLRPGA  360
PLCSHYAQNG VCKFGPSCKF DHPMRSLSYS PSASSLTDMP VAPYPVGSTI ATLAPSSSSS  420
DLRPEPLSGF SKNPLSSQMS SLSSSSASVG SVFSNTEALP QSSVQQSGQG SVSSSGGSSA  480
SHGGEAHTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-130	C3H family protein