PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY33056.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LBD

Protein Properties

Length: 202aa MW: 21542.6 Da PI: 7.9976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY33056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92	6.8e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ ++q +++ +v+k+FG++ ++++++a+p+++r+++++sl++eA r+ +Pv+Gavg++ +++++++q+++e+ TEY33056.1 2 SCNGCRVLRKGCSETCILRPCLqwidsTEAQGHATVFVAKFFGRAGLMSFISAVPHSQRPALFQSLLFEAAGRTVNPVNGAVGLLGTGNWHVCQAAVET 100 6*******************9998777889**************************************************************999 PP DUF260 95 all 97 +l+ TEY33056.1 101 VLR 103 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MSCNGCRVLR KGCSETCILR PCLQWIDSTE AQGHATVFVA KFFGRAGLMS FISAVPHSQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLGTGN WHVCQAAVET VLRGGALKPL PELLGGASAP 120 DDASDCTDHS PQKRRRLPEE TAAPKVAQLA DLDLSLTPGF RGGDLPEKPR RLGSPSMNSE 180 ESVTTTCGDR RANEVKLLNL FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-80	LBD family protein