PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY35131.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 560aa MW: 62769 Da PI: 9.1834

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY35131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	63	85	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ rtG C++G++C+F+H+p TEY35131.1 63 DCSYYIRTGVCRFGPTCRFNHPP 85 7********************96 PP
2	zf-CCCH	37.7	3.3e-12	106	130	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G++CkF+H++ TEY35131.1 106 QPECEYYLKTGTCKFGATCKFHHPR 130 799********************96 PP
3	zf-CCCH	30.8	5.2e-10	183	206	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++ r+G+Ck+G++CkF+H++ TEY35131.1 183 TECAYYIRNGQCKFGSTCKFHHPQ 206 58********************97 PP
4	zf-CCCH	37.6	3.8e-12	329	354	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ TEY35131.1 329 GQSECQFYMKTGDCKFGAVCKFHHPK 354 7899********************96 PP
5	zf-CCCH	35.3	2e-11	376	400	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f++r+G+Ck+G++CkF H++ TEY35131.1 376 EPVCVFYSRYGICKFGPSCKFDHPM 400 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MWMRVVNSYV ASFRFLLYAP PREDFRCDVV VIDFVIYVLW PVTLRSREQM ESGPYPVREG 60 ELDCSYYIRT GVCRFGPTCR FNHPPNRKLA IATAMMKGEY PERIGQPECE YYLKTGTCKF 120 GATCKFHHPR DKAGITGRVA LNVLGYPLCP FMKGLGLARL LDDVHLHKRR THTLVPYWRV 180 NETECAYYIR NGQCKFGSTC KFHHPQPSNM MVSLRGSAVY PAIHSPTTNQ LSYPLSRASF 240 IASPRWQSPS SYTPLVMQQG VVSVPGWNTY SGQPSSALSS ENQPPSAVNI HNDGTSHQDD 300 SGNIASEYGS VPMGYYAFQK DNVFPERPGQ SECQFYMKTG DCKFGAVCKF HHPKERLIPV 360 PDCHLSPIGL PLRLGEPVCV FYSRYGICKF GPSCKFDHPM TVFAYNTPAS SSTDSAAIRR 420 FLASSPGTVP ANFSSDGLMD ESYTNNRRLS LSEARQKPSG YWLVIFYVRL SETSRFLFNS 480 IAFWVICSMG MGAGLKPVFL IQPTLIQGLT YAYLGSVVKQ PWKRSKERDA SFNSSRGANS 540 STLIIRVIAS AIFCRGIGVL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MWMRVVNSYV ASFRFLLYAP PREDFRCDVV VIDFVIYVLW PVTLRSREQM ESGPYPVREG  60
ELDCSYYIRT GVCRFGPTCR FNHPPNRKLA IATAMMKGEY PERIGQPECE YYLKTGTCKF  120
GATCKFHHPR DKAGITGRVA LNVLGYPLCP FMKGLGLARL LDDVHLHKRR THTLVPYWRV  180
NETECAYYIR NGQCKFGSTC KFHHPQPSNM MVSLRGSAVY PAIHSPTTNQ LSYPLSRASF  240
IASPRWQSPS SYTPLVMQQG VVSVPGWNTY SGQPSSALSS ENQPPSAVNI HNDGTSHQDD  300
SGNIASEYGS VPMGYYAFQK DNVFPERPGQ SECQFYMKTG DCKFGAVCKF HHPKERLIPV  360
PDCHLSPIGL PLRLGEPVCV FYSRYGICKF GPSCKFDHPM TVFAYNTPAS SSTDSAAIRR  420
FLASSPGTVP ANFSSDGLMD ESYTNNRRLS LSEARQKPSG YWLVIFYVRL SETSRFLFNS  480
IAFWVICSMG MGAGLKPVFL IQPTLIQGLT YAYLGSVVKQ PWKRSKERDA SFNSSRGANS  540
STLIIRVIAS AIFCRGIGVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	172	KRRTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-158	C3H family protein