PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY37236.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 459aa MW: 50144.5 Da PI: 8.3559

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY37236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	50	75	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+F+H+ TEY37236.1 50 PGEPDCIYYLRTGSCGYGSNCRFNHP 75 5789*********************8 PP
2	zf-CCCH	29.2	1.6e-09	139	158	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+++H++ TEY37236.1 139 HYLKTGTCKYGSTCRYHHPK 158 8*****************96 PP
3	zf-CCCH	34.4	3.8e-11	178	201	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++rtG CkyG CkF+H++ TEY37236.1 178 KPCPFYMRTGLCKYGYACKFHHPQ 201 69********************97 PP
4	zf-CCCH	36.8	6.5e-12	302	327	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f++ G CkyG+ Ck++H++ TEY37236.1 302 DQPECRYFMEHGSCKYGSECKYHHPR 327 689*********************96 PP
5	zf-CCCH	32.6	1.3e-10	347	372	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++ +G+C+yG+ C+F H+ TEY37236.1 347 PGQPVCSYYSLYGICNYGPACRFDHP 372 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MPGNRKVSRI DSTSDRVVGA NFEAMRRLKV EESDENGGAG DERGSYPDRP GEPDCIYYLR 60 TGSCGYGSNC RFNHPSSAEQ VYGVKAGSEL PERAGQPDCG VILRFDFFSS SFGYNLAIVS 120 VRVVLNFQAK LDKYVVSQHY LKTGTCKYGS TCRYHHPKDR QADFLLNMLG LPMRQDAKPC 180 PFYMRTGLCK YGYACKFHHP QPTLAAPNAV PVMGPVYGSA GSAVVPSSGV SSASFPGAPL 240 SKATYFASSL QVPQSYMPLF LPQSQGWNTY MGNASPLPFT SVLTGPVPNG QQSVSYLPER 300 PDQPECRYFM EHGSCKYGSE CKYHHPREKL SPLVSTSVVP LGLPLRPGQP VCSYYSLYGI 360 CNYGPACRFD HPYGLSVPPT AFAYPPLAPY QRIASLVPVA DGSPAKSSKL SDWINKETTA 420 INKHHQNSNT KSLGESLDQS DSLPHSSKAS PDVHHDKSD

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MPGNRKVSRI DSTSDRVVGA NFEAMRRLKV EESDENGGAG DERGSYPDRP GEPDCIYYLR  60
TGSCGYGSNC RFNHPSSAEQ VYGVKAGSEL PERAGQPDCG VILRFDFFSS SFGYNLAIVS  120
VRVVLNFQAK LDKYVVSQHY LKTGTCKYGS TCRYHHPKDR QADFLLNMLG LPMRQDAKPC  180
PFYMRTGLCK YGYACKFHHP QPTLAAPNAV PVMGPVYGSA GSAVVPSSGV SSASFPGAPL  240
SKATYFASSL QVPQSYMPLF LPQSQGWNTY MGNASPLPFT SVLTGPVPNG QQSVSYLPER  300
PDQPECRYFM EHGSCKYGSE CKYHHPREKL SPLVSTSVVP LGLPLRPGQP VCSYYSLYGI  360
CNYGPACRFD HPYGLSVPPT AFAYPPLAPY QRIASLVPVA DGSPAKSSKL SDWINKETTA  420
INKHHQNSNT KSLGESLDQS DSLPHSSKAS PDVHHDKSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	4e-79	C3H family protein