PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY42186.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 462aa MW: 51537.8 Da PI: 5.0583

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY42186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.3e-12	141	164	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C++f+++G Ck+G +CkF+H+p TEY42186.1 141 EDCSYFMKFGSCKFGLNCKFNHPP 164 89********************97 PP
2	zf-CCCH	22.6	1.9e-07	187	210	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ + CkyG Ck++Hg TEY42186.1 187 QTECKYYLTSAGCKYGKDCKYSHG 210 679********************8 PP
3	zf-CCCH	39.6	8.8e-13	233	257	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG +C+F+H++ TEY42186.1 233 EKECPYYMRTGSCKYGLNCRFHHPE 257 689********************96 PP
4	zf-CCCH	34.3	4e-11	366	392	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ TEY42186.1 366 PGEPECSFFLKTGDCKFRSNCKFNHPK 392 5799*********************96 PP
5	zf-CCCH	29.6	1.2e-09	415	439	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+CkyG+ Ck+ H+ TEY42186.1 415 DQPICSHYHRYGICKYGPGCKYDHP 439 689*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MAESSSTSQK PPIEKVGLGF LLQDTPPIKT IHQPENSPDE GSDTPPSVVV TLDEETEFLN 60 AIERDLRELT IQQAHIESID EEIWDDVGTQ KDSDENEIDE GDEDKEGNEA INYSDGASKL 120 GGYNQNNSRR RVNYPMRPDA EDCSYFMKFG SCKFGLNCKF NHPPRRKNQN ARERTNYREE 180 NSEMGGQTEC KYYLTSAGCK YGKDCKYSHG SDRSSAGPMP EFNFLGLPIR NGEKECPYYM 240 RTGSCKYGLN CRFHHPEPVT VGGDSTSGYV NGGSFPSQFV SSSSPTSWSS PRSFNETSPF 300 VPAMFPPSQG APTSNQDWNG YQAATYSASE GLPTPPAFAM NNLPAEINFP MHRQPDTLIE 360 EYPERPGEPE CSFFLKTGDC KFRSNCKFNH PKNCGFKGKP NTYALSDKGL PLRPDQPICS 420 HYHRYGICKY GPGCKYDHPS NYAILPTPYD QPGVMLGRGN ES

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MAESSSTSQK PPIEKVGLGF LLQDTPPIKT IHQPENSPDE GSDTPPSVVV TLDEETEFLN  60
AIERDLRELT IQQAHIESID EEIWDDVGTQ KDSDENEIDE GDEDKEGNEA INYSDGASKL  120
GGYNQNNSRR RVNYPMRPDA EDCSYFMKFG SCKFGLNCKF NHPPRRKNQN ARERTNYREE  180
NSEMGGQTEC KYYLTSAGCK YGKDCKYSHG SDRSSAGPMP EFNFLGLPIR NGEKECPYYM  240
RTGSCKYGLN CRFHHPEPVT VGGDSTSGYV NGGSFPSQFV SSSSPTSWSS PRSFNETSPF  300
VPAMFPPSQG APTSNQDWNG YQAATYSASE GLPTPPAFAM NNLPAEINFP MHRQPDTLIE  360
EYPERPGEPE CSFFLKTGDC KFRSNCKFNH PKNCGFKGKP NTYALSDKGL PLRPDQPICS  420
HYHRYGICKY GPGCKYDHPS NYAILPTPYD QPGVMLGRGN ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-105	C3H family protein