PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY46401.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LBD

Protein Properties

Length: 218aa MW: 23862.1 Da PI: 7.3838

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY46401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.6	2.2e-29	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ p++q++++ +++k++G++ +++l+k+ p + r+d+++sl+yeA+ r+ +Pv+G+vg++ ++ + +q+++e+ TEY46401.1 2 SCNGCRVLRKGCVDNCTLRPCLdwiesPESQANATLFLAKFYGRAGLINLIKSGPSHLRPDIFRSLLYEACGRIINPVHGSVGLMCSGDWPRCQAAVEA 100 6************************************************************************************************99 PP DUF260 95 allke 99 +l ++ TEY46401.1 101 VLHGK 105 88776 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MSCNGCRVLR KGCVDNCTLR PCLDWIESPE SQANATLFLA KFYGRAGLIN LIKSGPSHLR 60 PDIFRSLLYE ACGRIINPVH GSVGLMCSGD WPRCQAAVEA VLHGKPLAAS DELHSCDIRH 120 LSKDARRGRI RSRSKRAGAD AESRGETKFT ITGWDEDRKG FEVKRARSHD SYSVETVEPA 180 LVNRGDVKPE SEEIGLELTL GGPNLVMGAV IEISDGEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	RSRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	4e-60	LBD family protein