PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY46637.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 612aa MW: 68108.8 Da PI: 5.5097

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY46637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	167	190	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C+f++++G Ck+G +CkF+H+p TEY46637.1 167 EDCSFYMKFGSCKFGLNCKFNHPP 190 89********************96 PP
2	zf-CCCH	20.2	1e-06	213	236	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ CkyG Ck++Hg TEY46637.1 213 QTECKYYLTPAGCKYGKDCKYSHG 236 579********************8 PP
3	zf-CCCH	38.6	1.8e-12	259	283	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG +C+F+H++ TEY46637.1 259 EKECPYYMRTGSCKYGLNCRFHHPE 283 679********************96 PP
4	zf-CCCH	30.8	5.1e-10	513	539	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff +tG Ck+ ++CkF+H++ TEY46637.1 513 PGEPECSFFVKTGDCKFRSNCKFHHPK 539 5799*********************96 PP
5	zf-CCCH	33.7	6e-11	562	586	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++r+G+CkyG+ Ck+ H+ TEY46637.1 562 DQPICTHYHRYGICKYGPACKYDHP 586 689*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MAESPPSTSE KPPIQKVVLG FLLEDTPLSD PINPEPEIPE NAPGGGSDPP KSAPEEVIGE 60 TAALDEEIEF LNAIERELSE LTIQQAHIEG VSERLVSIDE EEGGDVGKQK DGNDSESFEY 120 GNEIGEGDVD KEGNAAVNFG DGASKLGRFN QNNSRRRINY PMRPDAEDCS FYMKFGSCKF 180 GLNCKFNHPP RRKNPNIKER TNHREENSGR GGQTECKYYL TPAGCKYGKD CKYSHGSDRS 240 STSQTPEFNF LGLPIRIGEK ECPYYMRTGS CKYGLNCRFH HPEPVTVGGD SSSGYGNGGS 300 FPSQFVSSSS PTSWSSPRAF NENSPFVPVM FPPSPGAPTS KQDWNGYQVI FAYHPTAWFR 360 SVKLSVTVSV VDVFFKQTKP VSWIVEVMYG ILLLLFGELL LETFEVDMHT LAGLLLYLLL 420 CHNALANEWL HLAPKKGQVA VFSKVEIVKN KSLVYLCLIC FHFILDLFEA ATYSASEGLP 480 TPPAFALNNL PAEINFPMRH QPDILVEEYP ERPGEPECSF FVKTGDCKFR SNCKFHHPKS 540 RVFKGKPNTY TLSDKGLPLR PDQPICTHYH RYGICKYGPA CKYDHPSNFA ILPTPFEQPA 600 VMLEQGNESL EA

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MAESPPSTSE KPPIQKVVLG FLLEDTPLSD PINPEPEIPE NAPGGGSDPP KSAPEEVIGE  60
TAALDEEIEF LNAIERELSE LTIQQAHIEG VSERLVSIDE EEGGDVGKQK DGNDSESFEY  120
GNEIGEGDVD KEGNAAVNFG DGASKLGRFN QNNSRRRINY PMRPDAEDCS FYMKFGSCKF  180
GLNCKFNHPP RRKNPNIKER TNHREENSGR GGQTECKYYL TPAGCKYGKD CKYSHGSDRS  240
STSQTPEFNF LGLPIRIGEK ECPYYMRTGS CKYGLNCRFH HPEPVTVGGD SSSGYGNGGS  300
FPSQFVSSSS PTSWSSPRAF NENSPFVPVM FPPSPGAPTS KQDWNGYQVI FAYHPTAWFR  360
SVKLSVTVSV VDVFFKQTKP VSWIVEVMYG ILLLLFGELL LETFEVDMHT LAGLLLYLLL  420
CHNALANEWL HLAPKKGQVA VFSKVEIVKN KSLVYLCLIC FHFILDLFEA ATYSASEGLP  480
TPPAFALNNL PAEINFPMRH QPDILVEEYP ERPGEPECSF FVKTGDCKFR SNCKFHHPKS  540
RVFKGKPNTY TLSDKGLPLR PDQPICTHYH RYGICKYGPA CKYDHPSNFA ILPTPFEQPA  600
VMLEQGNESL EA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	8e-48	C3H family protein