PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY49196.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 512aa MW: 54542.2 Da PI: 7.6319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY49196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.2e-12	32	57	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ TEY49196.1 32 DEPDCIYYLRTGFCGYGNRCRFNHPR 57 6899********************96 PP
2	zf-CCCH	38.3	2.2e-12	118	142	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtG Ck+G++Ck++H++ TEY49196.1 118 EPVCQYFMRTGMCKFGASCKYNHPK 142 789********************96 PP
3	zf-CCCH	34.6	3.2e-11	163	188	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY49196.1 163 GEKECSYYIKTGQCKFGVTCKFHHPQ 188 6789********************97 PP
4	zf-CCCH	37.4	4.3e-12	333	359	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G++Ck++H+p TEY49196.1 333 PGQPDCQYYLRTGDCKFGATCKYHHPP 359 5789*********************97 PP
5	zf-CCCH	36.6	7.5e-12	381	405	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY49196.1 381 APLCSHYAQNGVCKFGPSCKFDHPM 405 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MPIDSRFDFV IAEPMWGLGL GEGPESYPER PDEPDCIYYL RTGFCGYGNR CRFNHPRDRS 60 AQIGACALNG IKGFYVILIA TRAEWNLPVL REYAEEIVYD AMGALRATGG EYPERHGEPV 120 CQYFMRTGMC KFGASCKYNH PKHGAGSSPP TTLNFYGYPL RQGEKECSYY IKTGQCKFGV 180 TCKFHHPQPA GIQMPAPGAG PGPLAGPAAM PTPTLYPTVQ SPSVQSSQQY GVLHGNWPVS 240 RPTMLPGSYV PGSYGHMLLA PGVVPVPGWN PYSAQVSPGA LQSSQPTVGA GPVYGITQLP 300 PSSTTYTGAH LSGTSLSGPS SSSQKEHAFP DRPGQPDCQY YLRTGDCKFG ATCKYHHPPE 360 WSSQQSVVVL SPMGLPMRPG APLCSHYAQN GVCKFGPSCK FDHPMRALSY STSASSLTDM 420 PVAPYPVGST NATLAPSSSS SLDLRPELLS GFSKDAFPAN LSSTNSSSAS IGSTFSRSGL 480 IPEFGIQHSG QSTASSTGGS SSHQEGEVNI SS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MPIDSRFDFV IAEPMWGLGL GEGPESYPER PDEPDCIYYL RTGFCGYGNR CRFNHPRDRS  60
AQIGACALNG IKGFYVILIA TRAEWNLPVL REYAEEIVYD AMGALRATGG EYPERHGEPV  120
CQYFMRTGMC KFGASCKYNH PKHGAGSSPP TTLNFYGYPL RQGEKECSYY IKTGQCKFGV  180
TCKFHHPQPA GIQMPAPGAG PGPLAGPAAM PTPTLYPTVQ SPSVQSSQQY GVLHGNWPVS  240
RPTMLPGSYV PGSYGHMLLA PGVVPVPGWN PYSAQVSPGA LQSSQPTVGA GPVYGITQLP  300
PSSTTYTGAH LSGTSLSGPS SSSQKEHAFP DRPGQPDCQY YLRTGDCKFG ATCKYHHPPE  360
WSSQQSVVVL SPMGLPMRPG APLCSHYAQN GVCKFGPSCK FDHPMRALSY STSASSLTDM  420
PVAPYPVGST NATLAPSSSS SLDLRPELLS GFSKDAFPAN LSSTNSSSAS IGSTFSRSGL  480
IPEFGIQHSG QSTASSTGGS SSHQEGEVNI SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-123	C3H family protein