PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY49609.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 407aa MW: 46305.6 Da PI: 4.8548

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY49609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.7	8.5e-20	15	53	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rqvt+ kRr+gilKKA+E+SvLCd+ + +i+fs++gk TEY49609.1 15 NSRQVTYGKRRAGILKKAQEISVLCDIPIVLIMFSPSGK 53 579**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIMFSP SGKPSIFCGQ 60 RSDIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQNR 120 VTTLQAQLAE VHERIRWWSN PDTIEDIEHL DQMENSLRES LNRTHITKEK IFKEPLIQFD 180 CTSQVCGDFG RVYEQELPKP QFANSMQFPL ATSSDQDCVN QSWLPGGEGQ HMMLSGEPQF 240 LGSRDMECSD YFPNVIEQDL ENSREMKNER RLDLLSVDDY SYSAHMKPPL GDQYPYNSFG 300 NLSFPDLMEP GKDVNFQLSS LGYQINRNFD LPHSLVPNAG PCAISMLDDN SYPPVSISQL 360 CGMPIMNYQV LSKLLVISCS LQTAPAIETK SGSYTACSSL LELRQCT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIMFSP SGKPSIFCGQ  60
RSDIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQNR  120
VTTLQAQLAE VHERIRWWSN PDTIEDIEHL DQMENSLRES LNRTHITKEK IFKEPLIQFD  180
CTSQVCGDFG RVYEQELPKP QFANSMQFPL ATSSDQDCVN QSWLPGGEGQ HMMLSGEPQF  240
LGSRDMECSD YFPNVIEQDL ENSREMKNER RLDLLSVDDY SYSAHMKPPL GDQYPYNSFG  300
NLSFPDLMEP GKDVNFQLSS LGYQINRNFD LPHSLVPNAG PCAISMLDDN SYPPVSISQL  360
CGMPIMNYQV LSKLLVISCS LQTAPAIETK SGSYTACSSL LELRQCT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-76	M-type_MADS family protein