PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY50593.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 485aa MW: 52670.6 Da PI: 6.7886

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY50593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.2e-06	435	457	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C+F H+ TEY50593.1 435 KPCIYFNSSRGCRNGPNCTFQHD 457 69********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MGGSQKSKRV SWATEVNLCQ VRLFLSEECP SQVGMGTQDH LLQAKAWSLQ AGGMASEDNL 60 PPGFELSQPA NPWAVKLSHI SLVKWKCPPR IEVDSSWRVV AGEESRETET QDQREMRVLE 120 AIYPRPSAIP LNPSALVGAE DSTNNDQCTP VVPITSIEDE DASVDTLYAS MGSNSTPMIS 180 QQQHSPHGEF LSQVNTTLTP SVGSATGMEP DIIAAAQAAL SSVMPNSDQR NLIDRELLMK 240 ILNDPKMIEQ LIANHTASAS GQTAASSSMA SSSTFHGMPV MGTKNVASYS LPGIPSTSAQ 300 YIPNLASTPM GSFDSDIMAV HRREPLPGRF TRPEMVVPSP IFAASGPYHS PSRTGSIPHL 360 RPSVPDVISV PSPSIAAPVA KDMNYYKSLI QQHGGERRET MPQFAHQSNQ ALVMGQEPLN 420 NTMMRPRDTK PRIMKPCIYF NSSRGCRNGP NCTFQHDVSP QQKVNSIPNV QGTKRMKLDR 480 EITGA

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MGGSQKSKRV SWATEVNLCQ VRLFLSEECP SQVGMGTQDH LLQAKAWSLQ AGGMASEDNL  60
PPGFELSQPA NPWAVKLSHI SLVKWKCPPR IEVDSSWRVV AGEESRETET QDQREMRVLE  120
AIYPRPSAIP LNPSALVGAE DSTNNDQCTP VVPITSIEDE DASVDTLYAS MGSNSTPMIS  180
QQQHSPHGEF LSQVNTTLTP SVGSATGMEP DIIAAAQAAL SSVMPNSDQR NLIDRELLMK  240
ILNDPKMIEQ LIANHTASAS GQTAASSSMA SSSTFHGMPV MGTKNVASYS LPGIPSTSAQ  300
YIPNLASTPM GSFDSDIMAV HRREPLPGRF TRPEMVVPSP IFAASGPYHS PSRTGSIPHL  360
RPSVPDVISV PSPSIAAPVA KDMNYYKSLI QQHGGERRET MPQFAHQSNQ ALVMGQEPLN  420
NTMMRPRDTK PRIMKPCIYF NSSRGCRNGP NCTFQHDVSP QQKVNSIPNV QGTKRMKLDR  480
EITGA