PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY50914.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 248aa MW: 27946.9 Da PI: 8.0289

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY50914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.6e-06	51	74	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC+ffa G C G+ C ++H+ TEY50914.1 51 FRVLCKFFAN-GACLKGEHCEYSHD 74 689*8888.***********5 PP
2	zf-CCCH	25.8	1.9e-08	82	101	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+++ G C yG rC++ H TEY50914.1 82 ICTFYQK-GVCAYGTRCRYDH 101 7****.*********** PP
3	zf-CCCH	19	2.5e-06	188	210	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G +C++ Hg TEY50914.1 188 RPICS-FAAVGDCPHGVSCPRVHG 210 78999.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSKRIDPSWT RYIKLSELNL VQLGLCVLII RKIHYCVNKT FKLVYDDFHS FRVLCKFFAN 60 GACLKGEHCE YSHDWKAPPN NICTFYQKGV CAYGTRCRYD HIKVSRLQSP ALSSSVELSS 120 AKEVSTRAVT LGFTAFTGVS VEHSSYNFPL HPPSIPAWGE NSGNCDNLVT LQGDDDLADF 180 RDVDPADRPI CSFAAVGDCP HGVSCPRVHG DLCPTCRKHC LHPFRPQERE EHLNTCEKKA 240 KTFRSINT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-49	C3H family protein