PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY53795.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LBD

Protein Properties

Length: 225aa MW: 24543.9 Da PI: 7.2884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY53795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.5	4.9e-29	2	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C ++C+l+p++ p++q++++ +++k++G++ +++l+k+ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++ + +q+++e+ TEY53795.1 2 SCNGCRVLRKGCIDNCTLRPCLdwiesPESQANATLFLAKFYGRAGLINLIKSGPNHLRPEIFRSLLYEACGRIINPVHGSVGLMCSGDWPRCQAAVEA 100 6*************************************************************************************************9 PP DUF260 95 allkee 100 +ll+++ TEY53795.1 101 VLLGKP 106 998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MSCNGCRVLR KGCIDNCTLR PCLDWIESPE SQANATLFLA KFYGRAGLIN LIKSGPNHLR 60 PEIFRSLLYE ACGRIINPVH GSVGLMCSGD WPRCQAAVEA VLLGKPLAAS DELQRCDIRH 120 LSKDARRGRI RSRSKRAGAD AESRADSSYT AAETKFTITG WDEDREGFEV KRARSHDSYS 180 VETVEPALVN RGGVKPEPEE IGLELTLGGP NLVMGAVIEI SDGGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	RSRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-60	LBD family protein