PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TEY54474.1
Organism
Salvia splendens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
Family C3H
Protein Properties Length: 255aa    MW: 26296.6 Da    PI: 8.6634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TEY54474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-106287227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+ C+ f   G Ck+Gd+C+FaHg+
  TEY54474.1 62 KTKVCNKFKTEGGCKFGDKCHFAHGE 87
                89**********************96 PP
2zf-CCCH33.85.6e-11223248127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC +f + G C +G+rC+FaHg+
  TEY54474.1 223 FKTKLCENFTK-GSCTFGERCHFAHGE 248
                 69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEGEKRGSVS GCPFGENCHF LHYVPGGYNA VAQMMNLAPA PTPRTAGGPM HGQNGSAPGA  60
VKTKVCNKFK TEGGCKFGDK CHFAHGEWEL GKPIAPSHED HRGGGGGPMP GRFGGGRMEP  120
PPAASFGASA TAKISVDASL AGAVIGKGGV NSKQICRQTG AKLSIRDHET DPNLRNIELE  180
GTFEQIQQAS AMVRELIVSI GPGSGLGKGF GGGGGPASTG SNFKTKLCEN FTKGSCTFGE  240
RCHFAHGEAE LRKTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-57C3H family protein