PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY57219.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 747aa MW: 81186.6 Da PI: 6.6017

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY57219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	320	340	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TEY57219.1 320 PCPDFRK-GACRRGDMCEYAHG 340 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MILVDLQLIV VCAVGLSNQI TILVQPKGAA INQSSMKDSN NVSVETDDSL SSLLEFVANN 60 DLESFRRLIE VNFSVVDAAG LWYVRNKGSK QINLEERTPL MVAATFGSVD VLKLIVALPE 120 VDLNKSCGVN KWTALHCAAF GGSVHALDVV KLLLSAGADP HIEDARGLRP VDVIVAHPKL 180 PGAKAALEDL LVNNISDASV GECNLRVTIT GSNASSPVLS SSPESRSACS LSDYVSSPTA 240 PKFVDPAANS VSEKKQYPVD PSLPDIRNSI YATDEFRMFS FKVRPCSRAY SHDWTECPFV 300 HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT 360 SCARQVCFFA HTQEELRPLY VSTGSGVPSP RSVASTASFM DMAAALSLLP GSPTSQSVMS 420 PSAFNQNMSP TANVMSHSSS GAWTQPNVPT LSLPGSNLQS SRLRSSLSAR DIPPEDLNML 480 QDYDSQQLIL NDMACFSQPR PNSAMLGSGR SQTTLTPNLE DLFSAEITSC PRLSDQAATF 540 GVFSPSHKSA VLNQFQPQQN ILSPINTNVF SPRNVEHPLL QASFGVSSPR MSPRSLEPGS 600 PMSARLSAFA QRERQQQQQQ QQQMQMRSLS SRELGSNHAP VVGSPTSAWS KWGPVNGKVD 660 WSVSAEHEGC GVKRPSSFDR RADGEDPDLS WVQSLVKESP PEMMDKAAAT SAAPSGECLK 720 PNLQTDSTDH TVLGAWLDQM RLDKLVV

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MILVDLQLIV VCAVGLSNQI TILVQPKGAA INQSSMKDSN NVSVETDDSL SSLLEFVANN  60
DLESFRRLIE VNFSVVDAAG LWYVRNKGSK QINLEERTPL MVAATFGSVD VLKLIVALPE  120
VDLNKSCGVN KWTALHCAAF GGSVHALDVV KLLLSAGADP HIEDARGLRP VDVIVAHPKL  180
PGAKAALEDL LVNNISDASV GECNLRVTIT GSNASSPVLS SSPESRSACS LSDYVSSPTA  240
PKFVDPAANS VSEKKQYPVD PSLPDIRNSI YATDEFRMFS FKVRPCSRAY SHDWTECPFV  300
HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT  360
SCARQVCFFA HTQEELRPLY VSTGSGVPSP RSVASTASFM DMAAALSLLP GSPTSQSVMS  420
PSAFNQNMSP TANVMSHSSS GAWTQPNVPT LSLPGSNLQS SRLRSSLSAR DIPPEDLNML  480
QDYDSQQLIL NDMACFSQPR PNSAMLGSGR SQTTLTPNLE DLFSAEITSC PRLSDQAATF  540
GVFSPSHKSA VLNQFQPQQN ILSPINTNVF SPRNVEHPLL QASFGVSSPR MSPRSLEPGS  600
PMSARLSAFA QRERQQQQQQ QQQMQMRSLS SRELGSNHAP VVGSPTSAWS KWGPVNGKVD  660
WSVSAEHEGC GVKRPSSFDR RADGEDPDLS WVQSLVKESP PEMMDKAAAT SAAPSGECLK  720
PNLQTDSTDH TVLGAWLDQM RLDKLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein