PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY60079.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 331aa MW: 36860.9 Da PI: 7.4308

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY60079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.5e-12	193	218	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ TEY60079.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MSGEEADGGT AATGEGSNVC NFFRKPSKGK NIRKRTAVED AEGEEEDSNS GSAVVYKKKQ 60 AAADNKLLFS SGPLKTSKGS EPEKQKESVF EYESSREIQV QNDSRATATL ETETDFSRDA 120 RAIRERVLKQ AEAALKGKNK SAGDEKLYKG LHGYTDYKAG FRREHTVASE KAGGAHGPLR 180 ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEQ EWDEKEKVRA 240 RKMAMGNKGG DDDDSPATSD EEDENALPFA CFICREPFVD AVVTKCKHYF CEHCALKHHA 300 KNKKCFVCNE PTFGIFNTAF EIRKRKAAEG K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-161	C3H family protein