PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY60405.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

RAV

Protein Properties

Length: 353aa MW: 40419.6 Da PI: 8.1125

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY60405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.1	1.6e-11	68	115	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++ykGV k grW A+I+ + r++lg+f +++eAa a+++a kl+ TEY60405.1 68 TRYKGVVCQK-EGRWGAQIYAN-----NHRVWLGTFNSEKEAAVAYDRASMKLR 115 68**8555.8**9993.....5******99*******99998 PP
2	B3	88.9	4e-28	187	292	1	97
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr 87 f+k+ltpsdv+k++rlv+pkkfa ++ +g + ++++l + d+s rsW+++++y+k+s+++v+t+GW++F+k++gL+++D v+F+ + TEY60405.1 187 FEKELTPSDVGKLNRLVIPKKFAVKYfpiiphanagkEGGSVQDVELLFLDRSMRSWNIRYCYWKSSQSFVFTRGWNRFAKEKGLRSRDRVIFYsY--- 282 99*****************************98884445699************************************************32... PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +++ ++ ++ TEY60405.1 283 ESGDQKFCIL 292 4444455655 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MKIFHIQYLF YLHSCNQFLG QHLLLVAGGR NLISQMMQEA SGVTKNLCGE ISDSNSSSHD 60 QVPANQPTRY KGVVCQKEGR WGAQIYANNH RVWLGTFNSE KEAAVAYDRA SMKLRSSPTF 120 RNFPSNDNMN VCEQRFQDQF STETVLRMIK DNSYASKLSD YMRGQVPQVP HVASLQDAPA 180 SRLRVLFEKE LTPSDVGKLN RLVIPKKFAV KYFPIIPHAN AGKEGGSVQD VELLFLDRSM 240 RSWNIRYCYW KSSQSFVFTR GWNRFAKEKG LRSRDRVIFY SYESGDQKFC ILDAAYDDNR 300 ARDGLVVDED DEVLEMEKPG DETDRIEPEN VQDKENEPSL SSKGFKLFGV KIV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MKIFHIQYLF YLHSCNQFLG QHLLLVAGGR NLISQMMQEA SGVTKNLCGE ISDSNSSSHD  60
QVPANQPTRY KGVVCQKEGR WGAQIYANNH RVWLGTFNSE KEAAVAYDRA SMKLRSSPTF  120
RNFPSNDNMN VCEQRFQDQF STETVLRMIK DNSYASKLSD YMRGQVPQVP HVASLQDAPA  180
SRLRVLFEKE LTPSDVGKLN RLVIPKKFAV KYFPIIPHAN AGKEGGSVQD VELLFLDRSM  240
RSWNIRYCYW KSSQSFVFTR GWNRFAKEKG LRSRDRVIFY SYESGDQKFC ILDAAYDDNR  300
ARDGLVVDED DEVLEMEKPG DETDRIEPEN VQDKENEPSL SSKGFKLFGV KIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-80	RAV family protein