PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY60499.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 489aa MW: 55095.3 Da PI: 4.9432

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY60499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	147	170	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C++++++G Ck+G +CkF+H+p TEY60499.1 147 EDCSYYMKFGSCKFGLNCKFNHPP 170 89********************97 PP
2	zf-CCCH	22.5	2e-07	193	216	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ + CkyG Ck++Hg TEY60499.1 193 QTECKYYLTSAGCKYGKDCKYSHG 216 679********************8 PP
3	zf-CCCH	39	1.4e-12	239	263	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG +C+F+H++ TEY60499.1 239 EKECPYYMRTGSCKYGLNCRFHHPE 263 679********************96 PP
4	zf-CCCH	34.2	4.2e-11	405	431	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ TEY60499.1 405 PGEPECSFFLKTGDCKFRSNCKFNHPK 431 5799*********************96 PP
5	zf-CCCH	28.6	2.4e-09	454	478	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++r+G+CkyG+ Ck+ H+ TEY60499.1 454 DQPICTHYHRYGICKYGPGCKYDHP 478 689*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MAESSSSSTS EKPPIEKVGL GFLLQDTPPI KPAIHQPEIA PYEGSDTPTS VVSLDEETEF 60 RNAIERDLCE LTIQQAHIES IDEENSDDVG TQKDSESLED ENEIDEGDED KEVNEAINYS 120 DGASKLGRYN QNNSRRRVNY PMRPDAEDCS YYMKFGSCKF GLNCKFNHPP RRKNQNVKER 180 ANYREENSER GGQTECKYYL TSAGCKYGKD CKYSHGSDRS SAGPMPEFNF LGLPIRIGEK 240 ECPYYMRTGS CKYGLNCRFH HPEPVTVGGD STSGYVNGGS FPSQFVYSSS PTSWSSPRSF 300 NETSPFVPAM FPPSQGAPTS NQDWNGYQIL FSDMMMSTYY FCLNSLLCCL ICFLFLFDLF 360 EAATYSASEG LPTPPAFAMN NLPAEINFPM HRQPDILIEE YPERPGEPEC SFFLKTGDCK 420 FRSNCKFNHP KNRGFKGKPN TYTLSDKGLP LRPDQPICTH YHRYGICKYG PGCKYDHPSN 480 YAILPTDPL

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MAESSSSSTS EKPPIEKVGL GFLLQDTPPI KPAIHQPEIA PYEGSDTPTS VVSLDEETEF  60
RNAIERDLCE LTIQQAHIES IDEENSDDVG TQKDSESLED ENEIDEGDED KEVNEAINYS  120
DGASKLGRYN QNNSRRRVNY PMRPDAEDCS YYMKFGSCKF GLNCKFNHPP RRKNQNVKER  180
ANYREENSER GGQTECKYYL TSAGCKYGKD CKYSHGSDRS SAGPMPEFNF LGLPIRIGEK  240
ECPYYMRTGS CKYGLNCRFH HPEPVTVGGD STSGYVNGGS FPSQFVYSSS PTSWSSPRSF  300
NETSPFVPAM FPPSQGAPTS NQDWNGYQIL FSDMMMSTYY FCLNSLLCCL ICFLFLFDLF  360
EAATYSASEG LPTPPAFAMN NLPAEINFPM HRQPDILIEE YPERPGEPEC SFFLKTGDCK  420
FRSNCKFNHP KNRGFKGKPN TYTLSDKGLP LRPDQPICTH YHRYGICKYG PGCKYDHPSN  480
YAILPTDPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-102	C3H family protein