PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY64093.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 462aa MW: 50348.7 Da PI: 8.3403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY64093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.5e-08	37	63	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C y ++C+++H++ TEY64093.1 37 PGQPDCAYYVRTGSCGYAAKCRYNHPR 63 5789*********************96 PP
2	zf-CCCH	37.2	4.9e-12	112	137	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG+Ck+G +CkF+H++ TEY64093.1 112 GEPPCQYYLRTGICKFGMSCKFNHPK 137 579*********************96 PP
3	zf-CCCH	36.5	8.1e-12	158	183	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF H++ TEY64093.1 158 GEQECSYYLKTGQCKFGITCKFDHPQ 183 6789********************97 PP
4	zf-CCCH	39	1.3e-12	313	338	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG CkyG++C+++H+ TEY64093.1 313 PGQPDCKYYMRTGDCKYGPSCRYNHP 338 5789*********************8 PP
5	zf-CCCH	28.1	3.6e-09	367	391	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + C+f+++ G+Ck+G +Ck+ H+ TEY64093.1 367 GVQACSFYMQKGQCKFGRTCKYDHP 391 5678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MKLYGDQQQV EWAQDSGLED SMRGLNLWER QVYPERPGQP DCAYYVRTGS CGYAAKCRYN 60 HPRDRSSSFM CCLLITIMRG VVEFVSFGMG FYTSVCLYVV QLGVGEYPER LGEPPCQYYL 120 RTGICKFGMS CKFNHPKNAG GSLTSAPLNS YGYPLRPGEQ ECSYYLKTGQ CKFGITCKFD 180 HPQSDGTSVS ASARPFYPTM QSLSSRTPEQ YDSATSSYRV ARPSLLPGSY VSGAYGHMLL 240 PGVVPIPNWN PHSGSVSPAP SPGAQASAGA TSVYGLSQLG SSPPAFVGAY SHLPSSAGPS 300 GSIVQEQKFP ERPGQPDCKY YMRTGDCKYG PSCRYNHPSC RYNHTPDWAV SKSNCALSPL 360 GLPLRPGVQA CSFYMQKGQC KFGRTCKYDH PIATLKYSPA SSYTEMPGTR YGPGLSAATT 420 LLPSYSFQEM QGEHIAGSSV DPGINRVWHS GNSSSDSANL ML

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MKLYGDQQQV EWAQDSGLED SMRGLNLWER QVYPERPGQP DCAYYVRTGS CGYAAKCRYN  60
HPRDRSSSFM CCLLITIMRG VVEFVSFGMG FYTSVCLYVV QLGVGEYPER LGEPPCQYYL  120
RTGICKFGMS CKFNHPKNAG GSLTSAPLNS YGYPLRPGEQ ECSYYLKTGQ CKFGITCKFD  180
HPQSDGTSVS ASARPFYPTM QSLSSRTPEQ YDSATSSYRV ARPSLLPGSY VSGAYGHMLL  240
PGVVPIPNWN PHSGSVSPAP SPGAQASAGA TSVYGLSQLG SSPPAFVGAY SHLPSSAGPS  300
GSIVQEQKFP ERPGQPDCKY YMRTGDCKYG PSCRYNHPSC RYNHTPDWAV SKSNCALSPL  360
GLPLRPGVQA CSFYMQKGQC KFGRTCKYDH PIATLKYSPA SSYTEMPGTR YGPGLSAATT  420
LLPSYSFQEM QGEHIAGSSV DPGINRVWHS GNSSSDSANL ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-141	C3H family protein